RNA id: TU480639


Basic Information

Item Value
RNA id TU480639
length 1222
RNA type TUCP
GC content 0.43
exon number 2
gene id dpm3
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13389916 ~ 13392833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCGCACATTACAAGTGGTGAGCTGGCTTAGAGTTCTCCAATTTTCTTCATCATGACCAAACTTCTGGAGTGGCTTCTGGGTGTGTCGCTGGTTGCTGTTGCCTGGGGActtgtgacctttgaccttctTGGCTTGCAGTTGCCCGCTGTGTACAAGGAGGTGGCTTGGCCCATGCCTGTGTACCTGCTGGTGGTGTTTGGGTGTTATTCTCTGGCAACAGTCGGTTACAGAGTAGCCACGTTTAACGACTGCGAAGATGCAGCCAGAGAGCTGAAGGCGCAGATACAAGAGGCTAAAGAGGACTTAAAGAAGAAGGGCCTGAAGATGTGAGGACTTTGTTGGAAATGGTGGACGTTGCTGGACTGTAATAGACCCCCTTTCTGACTCAGCTATGCTCtttttttgtgtctctgtgaCTTTCTCCTGTTTGTTATACATTTCTGACTTGAGACACTGAGAGATCACTATGGAACCGGGAACCATCCTAAAATGTCAGTACCTGAAATCAGATGTAGATGTTCTTTTGAATTTTTCTTCAAATGCAGTGCACATCATTATAGCAGTccatataaaattatataaacaaatgtCTAGAATGGAAATGTAGAATGTGCTGAACTGGCTTCTCCAAATGGAGACGtctctgtgatttattattattttttttatgtatttttggtGTCCCAGAAGTCAGAAGAATCAGAATTTGGAGTCAGACTAACTAACAACGTGGTTGCACAGCGTCATGCTTGTGTGAGATGACTGTGGCGTACGCTCGGCCCTAGCAGCACTCGATACAGGGTTGATTTTTAACAAGCTTGATAATAGGATACTATTGTTctagaaatacacacactgggGCACAGGAATGTCTGCAGCAGAAAAAAGTCAGCGCCATGTTACTGTTTTAAGTTACTGCAGCTGATTGTGTAATCCATATACATGAACTAGTGCCTGTATTCACAAAGCATCTTAACATGGGAGGGAGTGCTGATTTCAGATCCTGTGTTTTACTACATGGGGAAGGGAACCTGGTCCGGTCACTAAAAGGTTTTATGAATATTACCTCTtgcatgggtttttttttttgggttgttgCTTTCTGTTGGAAACTGTTAGAAGAGTCTCCTAATTTCCctaatggctgtttttttttgtcactgtatTGAATGGGTAAAATCTGAGTGGAAAACTAGACTGCATTCCATATGTAACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480641 lncRNA downstream 23188 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 171484 13218279 ~ 13218480 (-) True G405032
TU480487 lncRNA downstream 249309 13140420 ~ 13140655 (-) True G404997
TU480472 lncRNA downstream 262308 13127399 ~ 13127656 (-) True G404982
TU480449 lncRNA downstream 277323 13112433 ~ 13112641 (-) True G404959
TU480713 lncRNA upstream 59664 13452399 ~ 13454797 (-) True G405206
TU480772 lncRNA upstream 149268 13542003 ~ 13544405 (-) False rps27.1
XR_003403560.2 lncRNA upstream 167154 13559889 ~ 13563949 (-) True LOC113535067
TU480893 lncRNA upstream 208292 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 262670 13655405 ~ 13706542 (-) True G405368
XM_034301473.1 mRNA downstream 298218 13087487 ~ 13091746 (-) True LOC117596411
XM_034301498.1 mRNA downstream 443587 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 463700 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA downstream 463727 12915978 ~ 12926237 (-) False scamp3
XM_026928441.2 mRNA downstream 490005 12860573 ~ 12899959 (-) False ash1l
XM_026927908.2 mRNA upstream 16322 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 16322 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 20233 13412968 ~ 13443086 (-) False trim46b
XM_034301494.1 mRNA upstream 20670 13413405 ~ 13443086 (-) False trim46b
XM_026927909.2 mRNA upstream 20670 13413405 ~ 13443086 (-) False trim46b
TU480489 other downstream 248849 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 810313 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 811163 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 812304 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 813160 12576732 ~ 12576804 (-) True trnav-aac_25
TU480779 other upstream 163421 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 367026 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 367026 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 688637 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 721884 14114619 ~ 14119658 (-) True G405588

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028777 True 689 mRNA 0.44 1 NC_007130.7 8534297 ~ 8534985 (-)