Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480641 |
| length | 340 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G405144 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 13366437 ~ 13366776 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480522 | lncRNA | downstream | 147957 | 13218279 ~ 13218480 (-) | True | G405032 |
| TU480487 | lncRNA | downstream | 225782 | 13140420 ~ 13140655 (-) | True | G404997 |
| TU480472 | lncRNA | downstream | 238781 | 13127399 ~ 13127656 (-) | True | G404982 |
| TU480449 | lncRNA | downstream | 253796 | 13112433 ~ 13112641 (-) | True | G404959 |
| TU480446 | lncRNA | downstream | 259480 | 13106733 ~ 13106957 (-) | True | G404956 |
| TU480713 | lncRNA | upstream | 85623 | 13452399 ~ 13454797 (-) | True | G405206 |
| TU480772 | lncRNA | upstream | 175227 | 13542003 ~ 13544405 (-) | False | rps27.1 |
| XR_003403560.2 | lncRNA | upstream | 193113 | 13559889 ~ 13563949 (-) | True | LOC113535067 |
| TU480893 | lncRNA | upstream | 234251 | 13601027 ~ 13605892 (-) | True | G405353 |
| TU480913 | lncRNA | upstream | 288629 | 13655405 ~ 13706542 (-) | True | G405368 |
| XM_034301473.1 | mRNA | downstream | 274691 | 13087487 ~ 13091746 (-) | True | LOC117596411 |
| XM_034301498.1 | mRNA | downstream | 420060 | 12937224 ~ 12946377 (-) | True | crabp2b |
| XM_034301716.1 | mRNA | downstream | 440173 | 12915978 ~ 12926264 (-) | True | scamp3 |
| XM_034301717.1 | mRNA | downstream | 440200 | 12915978 ~ 12926237 (-) | False | scamp3 |
| XM_026928441.2 | mRNA | downstream | 466478 | 12860573 ~ 12899959 (-) | False | ash1l |
| XM_026927904.2 | mRNA | upstream | 23140 | 13389916 ~ 13392833 (-) | True | dpm3 |
| XM_026927908.2 | mRNA | upstream | 42281 | 13409057 ~ 13443086 (-) | False | trim46b |
| XM_026927906.2 | mRNA | upstream | 42281 | 13409057 ~ 13443086 (-) | True | trim46b |
| XM_034301492.1 | mRNA | upstream | 46192 | 13412968 ~ 13443086 (-) | False | trim46b |
| XM_034301494.1 | mRNA | upstream | 46629 | 13413405 ~ 13443086 (-) | False | trim46b |
| TU480489 | other | downstream | 225322 | 13140694 ~ 13141115 (-) | True | G404999 |
| trnav-cac_26 | other | downstream | 786786 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 787636 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| trnav-cac_25 | other | downstream | 788777 | 12577588 ~ 12577660 (-) | True | trnav-cac_25 |
| trnav-aac_25 | other | downstream | 789633 | 12576732 ~ 12576804 (-) | True | trnav-aac_25 |
| TU480639 | other | upstream | 23188 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480779 | other | upstream | 189380 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480964 | other | upstream | 392985 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 392985 | 13759761 ~ 13761555 (-) | True | s100a11 |
| XR_004577571.1 | other | upstream | 714596 | 14081372 ~ 14083846 (-) | True | npy |
