RNA id: TCONS_00008138


Basic Information

Item Value
RNA id TCONS_00008138
length 999
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_004261
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36037076 ~ 36040549 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCAAGCTTGTGCCCATCGATATTGTAAACAATCCGCAAGTAAATAATGTTCTCTCCCGCAAAATAATCATACATAAATTGACATAAAGACACAATGCGATCCTACAGCCAGGATTTGAGCGGCGGACTCGAGAATGTTCCTGTTTTGATCGAAAACAGTGTCCCTAAAGAGGCTCTCTCCTATTTTCAGTATGTGCCAGAGAATGTACAAGGACCCGGCTGTGACCTTGACCCGAATGCGGTGACTCTCCCTGGCTGCTCGTGTCGCGTCCAGTCCTGCTTCCCCGAAAGCTGCCCCTGCCTGAGATTTGGCCAGACGTACGACAGCAGAGCCTGTCTGAACCAACATCCACAGGAcgccacatacagcaggccagtATTCGAGTGCAATGCTCTCTGCTCCTGCGGCGAGTCCTGCCAAACCCGTGTGGTCCAAAACGGGGTGTGTGTCCGTCTGGGTGTTTTCAGCACCGCCGACAGAGGGTTGGGGGTGGAGGCTCTAGAGCGCCTTCCTTGTGGACGATTTGTATGTGAATATGCTGGGGAAGTCATTGGGATTGATGAAGCCCGTCGCCGTCAGCTTTCTCAGACTCCTCTTCATATGAATTATATTATCGCGGTGCAGGAGCATAGAGGGTTGGACAGGGTCACCCAAACTTTTGTGGACCCTGTAAATTTAGGCAATGTTGGGAGGTTCATCAATCACTCGTGCCAGCCAAATCTGATCATGCTGCCCGTCCGGGTGCATTCTGTGCTGCCCAGACTCGCTCTGTTCGCAAATCGGGATATTGAATGCTATGAAGAGCTGACTTTTGACTATTCAGGTGGACAAAACAGCAGTGCAGAAACAGCCAAATTGGATGAAAAGACTCACGTTGGAGCTGATGGTGAGGAAATACCTCAGAAGAAAGTCTGTCGTTGTGGGGCATCGAATTGTTCGGGATTTTTGCCATTGGATATGTCAATTCTTCATTAAAAAGTGTTTAGTTGTAAGTCAA

Function

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
ko00310 Lysine degradation
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080204-61 Predicted to enable histone-lysine N-methyltransferase activity and zinc ion binding activity. Predicted to act upstream of or within histone lysine methylation. Predicted to be located in nucleus. Orthologous to human SETMAR (SET domain and mariner transposase fusion gene).

Ensembl:

ensembl_id ENSDART00000112684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008124 lncRNA downstream 295632 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 295632 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008837 lncRNA downstream 295635 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008484 lncRNA downstream 295636 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008839 lncRNA upstream 201510 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008152 lncRNA upstream 250259 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008841 lncRNA upstream 443843 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 443843 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 443843 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008127 mRNA downstream 17071 35777329 ~ 36020005 (-) False XLOC_004260
TCONS_00008132 mRNA downstream 27152 35778351 ~ 36009924 (-) False XLOC_004260
TCONS_00008133 mRNA downstream 27152 35778351 ~ 36009924 (-) False XLOC_004260
TCONS_00008131 mRNA downstream 27152 35778351 ~ 36009924 (-) False XLOC_004260
TCONS_00008130 mRNA downstream 27152 35778351 ~ 36009924 (-) False XLOC_004260
TCONS_00008139 mRNA upstream 1068 36041617 ~ 36046741 (-) False XLOC_004262
TCONS_00008140 mRNA upstream 1720 36042269 ~ 36156935 (-) False XLOC_004262
TCONS_00008141 mRNA upstream 1896 36042445 ~ 36046458 (-) False XLOC_004262
TCONS_00008142 mRNA upstream 8030 36048579 ~ 36051004 (-) False XLOC_004262
TCONS_00008143 mRNA upstream 8337 36048886 ~ 36156971 (-) True XLOC_004262
TCONS_00008119 other downstream 811937 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1570563 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1681414 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2070804 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2665709 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1258822 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 2134522 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2907438 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 3049326 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 4142132 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU118515 False 900 TUCP 0.57 2 NC_056709.1 8879651 ~ 8881476 (+)