RNA id: TU480772


Basic Information

Item Value
RNA id TU480772
length 411
lncRNA type sense_over
GC content 0.49
exon number 3
gene id rps27.1
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13542003 ~ 13544505 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTTCCGGCAGCGGCTAACTCTTCGCCAACATGCCTCGCAAAAGACTTGCTGCACCCCACCCctgaggaggagagaaggaggcACAAGAAGAAGCGTCTCGTACAGAGCCCTAATTCCTACTTCATGGACGTCAAGTGTCCAGGATGTTCCTTCAGGAGGAAGCAGCATTAAGCTGTACACTAGATGCTCCAGTATGGAGGAAGGGAGAGGGGGGTTGGACTCGCCCTCCAAAGACCTCTCGGCTACGATCGCTGATCTTTCAACTTGAGAGAAAGGAACAGAAGCAAACACCTCCACCATCAGTTGCTTGAAAAACTAGTAAAGATGGCTCTCCAacccagtctctctctttcaataaaatgttttggctAAAATAgtgctcaggtgtgtgttctTTGAAAAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480713 lncRNA downstream 87206 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 175227 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 323523 13218279 ~ 13218480 (-) True G405032
TU480487 lncRNA downstream 401348 13140420 ~ 13140655 (-) True G404997
TU480472 lncRNA downstream 414347 13127399 ~ 13127656 (-) True G404982
XR_003403560.2 lncRNA upstream 15484 13559889 ~ 13563949 (-) True LOC113535067
TU480893 lncRNA upstream 56622 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 111000 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 191131 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 264078 13808483 ~ 13814892 (-) True G405419
XM_034301491.1 mRNA downstream 15903 13489949 ~ 13526100 (-) True chrna11
XM_026927906.2 mRNA downstream 98917 13409057 ~ 13443086 (-) True trim46b
XM_034301730.1 mRNA upstream 4012 13548417 ~ 13549215 (-) True LOC113535306
XM_026928305.2 mRNA upstream 11753 13556158 ~ 13558631 (-) True cks1b
XM_034301479.1 mRNA upstream 31279 13575684 ~ 13586550 (-) True aqp10b
XM_026928604.2 mRNA upstream 46634 13591039 ~ 13599620 (-) True hax1
XM_034301811.1 mRNA upstream 58922 13603327 ~ 13638125 (-) False ubap2l
TU480639 other downstream 149268 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 400888 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 962352 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 963202 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 964343 12577588 ~ 12577660 (-) True trnav-cac_25
TU480779 other upstream 11751 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 215356 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 215356 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 536967 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 570214 14114619 ~ 14119658 (-) True G405588

Expression Profile