RNA id: XM_026928592.2


Basic Information

Item Value
RNA id XM_026928592.2
length 592
RNA type mRNA
GC content 0.50
exon number 4
gene id rps27.1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13542003 ~ 13544505 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACCTTACTAAGATGTCTTCGCTTCATTTCCTCCAAAGTCCTACTTCCGGAATGCCCACGTGCTCTGTGAATAATATCGCGCCGCTTCCGCTGTGTACTTCCTTTCCGGCAGCGGCTAACTCTTCGCCAACATGCCACTCGCAAAAGACTTGCTGCACCCCACCCctgaggaggagagaaggaggcACAAGAAGAAGCGTCTCGTACAGAGCCCTAATTCCTACTTCATGGACGTCAAGTGTCCAGGATGCTATAAGATCACCACAGTCTTCAGCCATGCTCAGACagtagtgttgtgtgttggttGTTCCACTGTGCTGTGTCAACCCACTGGAGGCAAAGCACGTCTCACAGAAGGATGTTCCTTCAGGAGGAAGCAGCATTAAGCTGTACACTAGATGCTCCAGTATGGAGGAAGGGAGAGGGGGGTTGGACTCGCCCTCCAAAGACCTCTCGGCTACGATCGCTGATCTTTCAACTTGAGAGAAAGGAACAGAAGCAAACACCTCCACCATCAGTTGCTTGAAAAACTAGTAAAGATGGCTCTCCAacccagtctctctctttcaataaaatgttttggctAAAATA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480713 lncRNA downstream 87238 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 175259 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 323555 13218279 ~ 13218480 (-) True G405032
TU480487 lncRNA downstream 401380 13140420 ~ 13140655 (-) True G404997
TU480472 lncRNA downstream 414379 13127399 ~ 13127656 (-) True G404982
XR_003403560.2 lncRNA upstream 15384 13559889 ~ 13563949 (-) True LOC113535067
TU480893 lncRNA upstream 56522 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 110900 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 191031 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 263978 13808483 ~ 13814892 (-) True G405419
XM_034301491.1 mRNA downstream 15935 13489949 ~ 13526100 (-) True chrna11
XM_026927906.2 mRNA downstream 98949 13409057 ~ 13443086 (-) True trim46b
XM_034301730.1 mRNA upstream 3912 13548417 ~ 13549215 (-) True LOC113535306
XM_026928305.2 mRNA upstream 11653 13556158 ~ 13558631 (-) True cks1b
XM_034301479.1 mRNA upstream 31179 13575684 ~ 13586550 (-) True aqp10b
XM_026928604.2 mRNA upstream 46534 13591039 ~ 13599620 (-) True hax1
XM_034301811.1 mRNA upstream 58822 13603327 ~ 13638125 (-) False ubap2l
TU480639 other downstream 149300 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 400920 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 962384 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 963234 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 964375 12577588 ~ 12577660 (-) True trnav-cac_25
TU480779 other upstream 11651 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 215256 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 215256 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 536867 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 570114 14114619 ~ 14119658 (-) True G405588

Expression Profile