RNA id: XM_026928305.2


Basic Information

Item Value
RNA id XM_026928305.2
length 787
RNA type mRNA
GC content 0.43
exon number 4
gene id cks1b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13556156 ~ 13558631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACGCTGGGGGCGGGGCCATGTGATCTGAGAGGGAAATTTGTCAGGAAGGCAGAGGAACGTTAGAGAAACAGCGCAGTTTATTTGATACAACTCCAGCTAAATATTAACGTTTTACTGAATATATTTGTTGGGAACAAACCAGGTGAACTAACTGCCACGCCATGTCACACAAGCAGATCTATTATTCAGACAAATACGACGACGAAAAGTTTGAGTACAGGCACGTCATGTTACCCAAGGACATAGCTAAACGTGTGCCTAAAACACACCTGATGTCGGAGACGGAGTGGCGCAACCTGGGCGTTCAGCAGAGCCAGGGCTGGGTGCACTACATGATCCAtcagccagAACCTCACATCCTGCTGTTCCGCCGTCCTCTGCCCGCGACCAAACCCCAGTGATGGAAAGCAGGCGGAGAAGGACTCGATACACACTGCAGAAGGATGACAGAGAAAGATGGAAAACAAAGTGCCGATGAAATTTGGTGTCAGTTCCTTTTGATTATAAGTGGAATATGTTCTGCTTATAAAGGTTTTCCAAAAATGTTCTTATTGTTCCACACCTCTTTgcataaaaagaaaattcagaCTGTTCTCCTTTTCACTGCATAATTTAggtgagagaatgtgtgtttagAAAATGCAGCCTGAGGAAAAGCAGTCATAAAGTATGCTTTGCATTTAAACAGCGATTGaaccttctttttctttgtgtcaTTACAGAACACTTTGCATGTTGTTTATAGTACTGTGAATGTTGGTCATCTTCCACTTATTatttatga

Function

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K02219 CKS1; cyclin-dependent kinase regulatory subunit CKS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480772 lncRNA downstream 11753 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 101361 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 189382 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 337678 13218279 ~ 13218480 (-) True G405032
TU480487 lncRNA downstream 415503 13140420 ~ 13140655 (-) True G404997
XR_003403560.2 lncRNA upstream 1258 13559889 ~ 13563949 (-) True LOC113535067
TU480893 lncRNA upstream 42396 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 96774 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 176905 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 249852 13808483 ~ 13814892 (-) True G405419
XM_034301730.1 mRNA downstream 6943 13548417 ~ 13549215 (-) True LOC113535306
XM_026928592.2 mRNA downstream 11653 13542035 ~ 13544505 (-) True rps27.1
XM_034301491.1 mRNA downstream 30058 13489949 ~ 13526100 (-) True chrna11
XM_034301494.1 mRNA downstream 113072 13413405 ~ 13443086 (-) False trim46b
XM_034301479.1 mRNA upstream 17053 13575684 ~ 13586550 (-) True aqp10b
XM_026928604.2 mRNA upstream 32408 13591039 ~ 13599620 (-) True hax1
XM_034301811.1 mRNA upstream 44696 13603327 ~ 13638125 (-) False ubap2l
XM_034301812.1 mRNA upstream 44696 13603327 ~ 13637977 (-) False ubap2l
XM_034301810.1 mRNA upstream 44696 13603327 ~ 13637977 (-) True ubap2l
TU480639 other downstream 163423 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 415043 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 976507 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 977357 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 978498 12577588 ~ 12577660 (-) True trnav-cac_25
TU480964 other upstream 201130 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 201130 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 522741 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 555988 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 984586 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile