RNA id: TU480913


Basic Information

Item Value
RNA id TU480913
length 491
lncRNA type read_through
GC content 0.45
exon number 2
gene id G405368
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13655405 ~ 13706542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggaagctttccactagatgttggagcgtggctgtggggatttgtgttcattcagctacaagagcattagtgaggtcaggcgctgatgttgggatgtcgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgagcacaggggcattgtcatgctggaacaggtttcagcctcttagttccagtgaagagaaactgtaatgctacagcacacagagacgttctatacaattgtgtgctccaactttgtggtaacagtttgatgaagaaccacatatgggtatgatggtcaggggttcacatacttttggccatataatgaaatgtatacacacaatgtattttatatctagaaacaataaataacactcTCTTagtatgtatattttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480893 lncRNA downstream 49513 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 91456 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 111000 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 200608 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 288629 13366437 ~ 13366776 (-) True G405144
TU480934 lncRNA upstream 28994 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 101941 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 109356 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 109356 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA upstream 109356 13815898 ~ 13839833 (-) True G405420
XM_034301811.1 mRNA downstream 17280 13603327 ~ 13638125 (-) False ubap2l
XM_034301812.1 mRNA downstream 17428 13603327 ~ 13637977 (-) False ubap2l
XM_034301810.1 mRNA downstream 17428 13603327 ~ 13637977 (-) True ubap2l
XM_034301814.1 mRNA downstream 17430 13603327 ~ 13637975 (-) False ubap2l
XM_034301813.1 mRNA downstream 19122 13603327 ~ 13636283 (-) False ubap2l
XM_034301670.1 mRNA upstream 22585 13729127 ~ 13734761 (-) True pygo2
XM_026928285.2 mRNA upstream 22585 13729127 ~ 13734755 (-) False pygo2
XM_034301583.1 mRNA upstream 40336 13746878 ~ 13750446 (-) False s100s
XM_034301584.1 mRNA upstream 40336 13746878 ~ 13750443 (-) False s100s
XM_026928111.2 mRNA upstream 40337 13746879 ~ 13750465 (-) False s100s
TU480779 other downstream 96785 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 262670 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 514290 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1075754 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1076604 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 53219 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 53219 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 374830 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 408077 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 836675 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile