Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480934 |
| length | 213 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G405386 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 13735536 ~ 13735748 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480913 | lncRNA | downstream | 28994 | 13655405 ~ 13706542 (-) | True | G405368 |
| TU480893 | lncRNA | downstream | 129644 | 13601027 ~ 13605892 (-) | True | G405353 |
| XR_003403560.2 | lncRNA | downstream | 171587 | 13559889 ~ 13563949 (-) | True | LOC113535067 |
| TU480772 | lncRNA | downstream | 191131 | 13542003 ~ 13544405 (-) | False | rps27.1 |
| TU480713 | lncRNA | downstream | 280739 | 13452399 ~ 13454797 (-) | True | G405206 |
| TU480985 | lncRNA | upstream | 72735 | 13808483 ~ 13814892 (-) | True | G405419 |
| TU480986 | lncRNA | upstream | 80150 | 13815898 ~ 13872428 (-) | False | G405420 |
| TU480987 | lncRNA | upstream | 80150 | 13815898 ~ 13869755 (-) | False | G405420 |
| TU480988 | lncRNA | upstream | 80150 | 13815898 ~ 13839833 (-) | True | G405420 |
| TU481157 | lncRNA | upstream | 340694 | 14076442 ~ 14077150 (-) | True | G405575 |
| XM_034301670.1 | mRNA | downstream | 775 | 13729127 ~ 13734761 (-) | True | pygo2 |
| XM_026928285.2 | mRNA | downstream | 781 | 13729127 ~ 13734755 (-) | False | pygo2 |
| XM_034301653.1 | mRNA | downstream | 9381 | 13689122 ~ 13726155 (-) | True | cgnb |
| XM_026928526.2 | mRNA | downstream | 57245 | 13646267 ~ 13678291 (-) | True | tuft1b |
| XM_034301811.1 | mRNA | downstream | 97411 | 13603327 ~ 13638125 (-) | False | ubap2l |
| XM_034301583.1 | mRNA | upstream | 11130 | 13746878 ~ 13750446 (-) | False | s100s |
| XM_034301584.1 | mRNA | upstream | 11130 | 13746878 ~ 13750443 (-) | False | s100s |
| XM_026928111.2 | mRNA | upstream | 11131 | 13746879 ~ 13750465 (-) | False | s100s |
| XM_026928110.2 | mRNA | upstream | 11132 | 13746880 ~ 13750502 (-) | True | s100s |
| XM_026928109.2 | mRNA | upstream | 17065 | 13752813 ~ 13758428 (-) | True | s100u |
| TU480779 | other | downstream | 176916 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480639 | other | downstream | 342801 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480489 | other | downstream | 594421 | 13140694 ~ 13141115 (-) | True | G404999 |
| trnav-cac_26 | other | downstream | 1155885 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 1156735 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| TU480964 | other | upstream | 24013 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 24013 | 13759761 ~ 13761555 (-) | True | s100a11 |
| XR_004577571.1 | other | upstream | 345624 | 14081372 ~ 14083846 (-) | True | npy |
| TU481171 | other | upstream | 378871 | 14114619 ~ 14119658 (-) | True | G405588 |
| trnat-ugu_14 | other | upstream | 807469 | 14543217 ~ 14543289 (-) | True | trnat-ugu_14 |
