Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480965 |
| length | 1015 |
| RNA type | TUCP |
| GC content | 0.39 |
| exon number | 3 |
| gene id | s100a11 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 13759761 ~ 13761557 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480934 | lncRNA | downstream | 24013 | 13735536 ~ 13735748 (-) | True | G405386 |
| TU480913 | lncRNA | downstream | 53219 | 13655405 ~ 13706542 (-) | True | G405368 |
| TU480893 | lncRNA | downstream | 153869 | 13601027 ~ 13605892 (-) | True | G405353 |
| XR_003403560.2 | lncRNA | downstream | 195812 | 13559889 ~ 13563949 (-) | True | LOC113535067 |
| TU480772 | lncRNA | downstream | 215356 | 13542003 ~ 13544405 (-) | False | rps27.1 |
| TU480985 | lncRNA | upstream | 46928 | 13808483 ~ 13814892 (-) | True | G405419 |
| TU480986 | lncRNA | upstream | 54343 | 13815898 ~ 13872428 (-) | False | G405420 |
| TU480987 | lncRNA | upstream | 54343 | 13815898 ~ 13869755 (-) | False | G405420 |
| TU480988 | lncRNA | upstream | 54343 | 13815898 ~ 13839833 (-) | True | G405420 |
| TU481157 | lncRNA | upstream | 314887 | 14076442 ~ 14077150 (-) | True | G405575 |
| XM_026928109.2 | mRNA | downstream | 1333 | 13752813 ~ 13758428 (-) | True | s100u |
| XM_026928110.2 | mRNA | downstream | 9259 | 13746880 ~ 13750502 (-) | True | s100s |
| XM_026928111.2 | mRNA | downstream | 9296 | 13746879 ~ 13750465 (-) | False | s100s |
| XM_034301583.1 | mRNA | downstream | 9315 | 13746878 ~ 13750446 (-) | False | s100s |
| XM_026928448.2 | mRNA | upstream | 100 | 13761655 ~ 13771533 (-) | False | pbxip1a |
| XM_026928449.2 | mRNA | upstream | 100 | 13761655 ~ 13771533 (-) | True | pbxip1a |
| XM_034301496.1 | mRNA | upstream | 100 | 13761655 ~ 13771532 (-) | False | pbxip1a |
| XM_026928451.2 | mRNA | upstream | 21407 | 13782962 ~ 13804588 (-) | True | LOC113535216 |
| XM_034301581.1 | mRNA | upstream | 164280 | 13925835 ~ 13999667 (-) | False | oxnad1 |
| TU480779 | other | downstream | 201141 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480639 | other | downstream | 367026 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480489 | other | downstream | 618646 | 13140694 ~ 13141115 (-) | True | G404999 |
| trnav-cac_26 | other | downstream | 1180110 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 1180960 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| XR_004577571.1 | other | upstream | 319817 | 14081372 ~ 14083846 (-) | True | npy |
| TU481171 | other | upstream | 353064 | 14114619 ~ 14119658 (-) | True | G405588 |
| trnat-ugu_14 | other | upstream | 781662 | 14543217 ~ 14543289 (-) | True | trnat-ugu_14 |
| trnat-ugu_15 | other | upstream | 784551 | 14546106 ~ 14546178 (-) | True | trnat-ugu_15 |
| TU481617 | other | upstream | 1205921 | 14967476 ~ 15013988 (-) | True | G405961 |
