RNA id: TU481171


Basic Information

Item Value
RNA id TU481171
length 1409
RNA type TUCP
GC content 0.42
exon number 4
gene id G405588
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14114619 ~ 14119658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actttattaggaacacctgtacacctgctcatttatgtagCTATActtgtggcagcagcacaatgcataagtTCAGGCAgatggtgccagatgggctggtttgagtatgaatatcaaaaactgctgatctcctgggattttcacacacaacagtctctgaaactctgtgaaaatcccaggatatcagcagtttctgaaatactcaatccagctCTTCTGGCAGCAGCAACCATgccagagatcacactttttccccatttcgatgtttgatgtgaacattatctgaagctcctgacctgtatctgcatgattttatgcattgtgctgctgccatatgattggttgatttgtcttgctacgatggcttaggagTACAATTGCTGTGATAgttttaggactgcaattgccatgaacagtttgcactcaggtctctatcagtgaacagtggataagttcaacaaaacagacttcatgtgaaaactgtaatgaatttactggttacacatttgcactatttgtccatatagtacacagttatgaagggatttatttataatcgcactatcgggtgtcacccagatgaggatggttccctgtggagtctggttcctctcaagttttcttcctcatatcatctcagggagtttttcactgccactgtcacctctggctcactcattagggataaattcatacatttaaaatttatatcctgaatgtatttatttttgtaaagctgctttgtgacaatgtccatcgttaaaagcgctatacaaataaaagaaaattgaattgaattaaatattcattatgagcTCTACCACTTCTTACACACCAGATACAGGAAGTGCATTTATTGTCTCAAAAGGTTGTGCTACAAAGTATTTGGTTAAAGGTCCCAGTATTTGCccatgccattttcatttgttctattatttaaaataacatctTCAGTAaaacacgtgtgtgtgcgtgtgtgtgttctcttctCACCCTGCCAAAGTGTGAAGTTTTTGGATTCGCAGTGGCATGCAGACACAGGAGGGTGGTGGCTTACCTGAGGAATGGGGAAACGCAGTGTGCATGAGCGAATACTTctgtgagGTTGCTCATATTGGGACAAGTCAAGAAGATCAGCGATTCACAAACCTAGTTCGTATGTTTtgtattcagaccccttcagtaCTTTGTAGAAGCTCCTTTGGCAGCAGTTACAGCTTTGAGTCTTCTTGGAGAAAAAACGACAGGACTCACCAGTACTGGCCAACCTGCAGAAGTCCTCCTGCAACTGCGAGGCATCAGTGGGTGAGTCTGGCGTGTCTAGATGTGACTCTGGACAGCAAGGCTCAGAATATGTCAGGTTTGGGTTTGAAACATGTAGATGAGCAGATGAAGTTGAGCCAGAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481157 lncRNA downstream 37469 14076442 ~ 14077150 (-) True G405575
TU480986 lncRNA downstream 242191 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 244864 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 274786 13815898 ~ 13839833 (-) True G405420
TU480985 lncRNA downstream 299727 13808483 ~ 13814892 (-) True G405419
XR_004577551.1 lncRNA upstream 63828 14183486 ~ 14191755 (-) True LOC117596429
TU481288 lncRNA upstream 136866 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 185281 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 194081 14313739 ~ 14314834 (-) True G405701
TU481315 lncRNA upstream 259234 14378892 ~ 14385650 (-) True G405707
XM_026928309.2 mRNA downstream 30773 14081372 ~ 14083846 (-) False npy
XM_026928422.2 mRNA downstream 40444 14067317 ~ 14074175 (-) False ccdc126
XM_034301712.1 mRNA downstream 40444 14067317 ~ 14074175 (-) False ccdc126
XM_034301713.1 mRNA downstream 40476 14067317 ~ 14074143 (-) True ccdc126
XM_034301600.1 mRNA downstream 68578 14016688 ~ 14046041 (-) False igf2bp3
XM_034301504.1 mRNA upstream 20286 14139944 ~ 14168596 (-) False mpp6b
XM_034301505.1 mRNA upstream 20286 14139944 ~ 14168590 (-) True mpp6b
XM_026928099.2 mRNA upstream 53176 14172834 ~ 14195466 (-) True dazl
XM_026928095.2 mRNA upstream 76297 14195955 ~ 14218170 (-) False tbc1d5
XM_026928093.2 mRNA upstream 76297 14195955 ~ 14218170 (-) True tbc1d5
XR_004577571.1 other downstream 30773 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 353064 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 353103 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 555999 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 721884 13389964 ~ 13392735 (-) False dpm3
trnat-ugu_14 other upstream 423559 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 426448 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 847818 14967476 ~ 15013988 (-) True G405961

Expression Profile