RNA id: TU481315


Basic Information

Item Value
RNA id TU481315
length 3627
lncRNA type intronic
GC content 0.41
exon number 3
gene id G405707
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14378892 ~ 14385650 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTACTCTCCTCAACATGAGGAGACGTCTGCGTAGAAAATCACAGACACGTATCAGACTAAACTGATCAAACGAGTGCTGAGTTACAGTAGTTAATTCAGCGTGAAATTCTCTCAGAGGAGGACGGAGACAAACAGCGACATGGCCGAGGAATAAAATCAGAGAGGAGCTCCTGCACAATAAGAAATGACCCCAGGACCCCGTGTACATTTAATCCTGTCCGAATACGGCTCATGTTTCCACTGATTCTGTGCACACTTTGATTGGACAACACTTTACATATATAGTAGCATCTTTTAGGAAGTGTTTTATAAAGTGTACCAGATTGAGTTTACGGTGTCCAGTCTTAGGAAAACCTGCAGTATGTGGCTGATGTTTGCAGCAAATAGCTAAACAGGCTGTTGGAAGTTGGCTGTAAAAAATCTCTGGACATGTGATGAGATTGAAACGATGCAGTCCGCTCTAACAGGCTGCTTTGAGAGTGTACAAGGCAATTTTTGGTTACACATATAGAGTAAATGACAAGTTCATTAGCTAGGCTACTGGGTAAGCTCGAGCGTGCTGTGCAGTCCCATGTTTACGTGGCCCACAAACTTTACTGACTAGGCTACAAAGTGGTAGCTAACAAACGTATGGCAAGCTAGTTATTAATGAAGTAAGGGAAACATGACTATATGAATTTCCAAAGCAGGGAAATTTGTGTTTCCATACTCTATATCCTGTCCTGATAAAGTTTTATCACAAGTACACGTGTGTGTCCTCGATGGAAAGTCACTCGGTCGTTGGCAGGCTCCAGCTGCGGTGTTCTCGTGTTATTTTCTCTCCGTATGTTTAACTGTGCAGTGGTTATATGACTGCATTGCACTGCACTTTAGTTTGCTCGGTCTCCTGAGTGTTTCCACGTACTCGCGTGTCTCTGATTCTCAAAAGATCATCGGTCATCCGCGCACACTGAGTAATCCAGCTAGTGAAACCCGTCAGACGGACTGTGCCTCGgccgatgtgtgtagtgcagcaggcggaGAGATCCGCACGCATGcgttatagttacagcattgagGTGCGTCACACAATCGTGAACtgcattacatttaaacatacacGCCAGTGGAAAACTtctgttttgcaaaagtcagtAAGGAGattgtttcatttataaatgtaagcGTAGCTACTTGTTACCTCGGCTTGTgtagggttgcagtggagaaGAGCAGGTTTGTTTCACTTCGGGAAAGCTCTTCTCTACAGCTGTTTTCATTGTCTAAGACTGATGGTGGCTTATTTTCACTCAGCTAGGGCTGTCTCGAGACCAGAGGTATTCAGACTTCTTCACCATAAGCCCACTTCCCAGTTTTTTTTGAGAACTCGCCCCGTCCCCAGGCccaaaaataaattcagtgaaCAGGAAGGTAAATGCAGTGAACAGTGAGAAACATAACCGTACATTTCAGTATAATCCTTTTGCAAATCTCTGGTCTGATGTTGCTCCTGAAAGCGGAATGGTTTGTGACCATCATGGGAGAGTAAAGTTTTATAATTCtcatcagcactttgtaaagtcttaaattttacactttattgtaggcctacttttttttttgagttaaacttttcagccttttttctcttttgggcaaaaagaaaagagatttTGACTAAAATATTCCACTGGCCTCCCTcttatagttaactgatgttgtATACTTATTTAACAATCGTTATGTCAGACACACATTGATAGACTTTATTTAACCTTCATAATAAACTAAAAGCGAGTGTGAGAAATGAGAAAGCAGGAGCGCCGCCTCAGCGTATGTTTTCCAGctcaactgtcagtcattctgGATTCACATGCTGATTGTctcatctgctgttttaatTAGAGGCAAAAAAGAAGACGTACTTTATTTGGGCatacttttgtgttttgttgttaaaatgcgCGGGTCCTGTGTGAAATGGCAGGCCTTAAACAGTcaattaaatctttattttttggtattttcatCTCCCCGTGAACACCTGCTAGTCAGTGTTTGCTACTGTGTTGGTTGCTGTCGTGTACTACTAATAACGAACTCCTCACACTGAGACTTgcatttaagatgttttatcagattACTTGCCATTTTCACAGAGTACAGTTTGCAGTTGCTTTATTTGctatcattaatcatgaaataagTCCAGATCTGTCATTTCGTGTCACATAGGCTTACATGGCATAGTATCACACTGTATTGGATGTTGGTATCGGAGCAAGTGTGAGTAAATGAGCTCAGTATCGGACCTGGACCAGACTCTGTTTTCAGTTGTGTAGTTGTGAGATTTGTTTGGTGGCTGAAAATGATAAGCACAATTAGCTGAGAAAAAGCTGCACAGTCAGATGACGGTATTAGTAGCACTATAGATTTTATCGATTTTATTGATCTGAGTGCTGATTGGTTTAATTGGAAAAGTGCCGTCTGAtggctaaataaatgttttggtATTTGCTGGTATTTTTGGGTTTGATTTTTAAGAGTGAACGACCAcaggttgtttttattttcctgtgcTTCCTATATTTTTTCCTGTAATGACGTAAAATgcacatgacatttttttctgtctggccacgccccttcTTTTCCCACCTCAGCGTCGCAGCAGCAGTACCCTGATCATACACATTGGCTTCATCCGACATGCCTCCAAAGCCACGGCCGATACGGTCGTCAGTCAGCGATGGTTAGGAGGAACCAcaggaaaatgacattttgcaCACAATCTCACAAGCCTAGCGTTCACCTTACGCCAGTACAGTAGCAAAAAACCACCGGAACCTGGTTACAAGTCAGCTGTAGCTGCTAGTTTCTACAATTAGCATTtagttttagtcttttttttaattaattgccTATTAACAAGATATGCAATGTTTACAAAAGTGGAGATGTAATGAGTATTAGCTGTAAACGTAACGAGTTATTGGCTGTAACTGAGCTCGTTATGAAATGATATAAACTACACATGCATGtgctctgttctgtttttttctttaaatatctgttcATGTTTTGTGACTGAAGACGTTCAGCAGCACAGACATGGGAAGCGAAGACgcatcagagaaagatgttttgctGCTCTGCTCTGAGGACAAGCAGCAGGTTATTAAAGGTTATATAGTATACAGAAGTATAGGCTAAAGATAGGTGAAAAGCTTAAAGCTGCAGACGCTACGCTTTCCCACAGACAGTTAAGTCGTCTGACTTAATAGCCTTCATGACAGTTGGAATCTATGATAGTTGGCAGTAGTGATACTATCGTCAGTCGTCCTGAGCCCAGCCAATAGTTCTGGGAAAAAACAAGCCTTTACTGATCTGTCAGTTCAGTAAGCAGAAACTTCAGGGGCGTATTTGTGCCAATTGCTGAAACCTTGAGTTCTGTCGCTAGCTAATAACTTTGTGAAAAAGTGAATAAGCAGTGGTGTATTAGGGGTTATCCAAATTCACAGAGCAACTCTAACATGAACTGATGTGTTAAATGAAACAGTAGCTGGCTATTAGTAGTCACACAGCACACACGATTTGAGTGAATGTCCTATTGCCTATAAACGTGGTGAAATTGAGAGCGCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481288 lncRNA downstream 49692 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA downstream 49692 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA downstream 64058 14313739 ~ 14314834 (-) True G405701
XR_004577551.1 lncRNA downstream 187137 14183486 ~ 14191755 (-) True LOC117596429
TU481157 lncRNA downstream 301742 14076442 ~ 14077150 (-) True G405575
TU481349 lncRNA upstream 89830 14475480 ~ 14478639 (-) False tpbga
TU481546 lncRNA upstream 232999 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA upstream 233688 14619338 ~ 14654751 (-) True G405901
TU481553 lncRNA upstream 259203 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 302373 14688023 ~ 14720906 (-) True G405909
XM_026928095.2 mRNA downstream 160722 14195955 ~ 14218170 (-) False tbc1d5
XM_026928093.2 mRNA downstream 160722 14195955 ~ 14218170 (-) True tbc1d5
XM_026928097.2 mRNA downstream 160722 14196853 ~ 14218170 (-) False tbc1d5
XM_026928094.2 mRNA downstream 166587 14196794 ~ 14212305 (-) False tbc1d5
XM_026928099.2 mRNA downstream 183426 14172834 ~ 14195466 (-) True dazl
XM_026928374.2 mRNA upstream 55150 14440800 ~ 14452371 (-) True nudc
XM_026928455.2 mRNA upstream 74742 14460392 ~ 14470818 (-) False kdf1b
XM_026928456.2 mRNA upstream 74742 14460392 ~ 14470712 (-) False kdf1b
XM_026928453.2 mRNA upstream 74742 14460392 ~ 14470712 (-) False kdf1b
XM_026928454.2 mRNA upstream 74742 14460392 ~ 14470711 (-) False kdf1b
TU481171 other downstream 259234 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 295046 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 617337 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 617376 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 820272 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_14 other upstream 157567 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 160456 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 581826 14967476 ~ 15013988 (-) True G405961

Expression Profile