RNA id: TU481349


Basic Information

Item Value
RNA id TU481349
length 1446
lncRNA type sense_over
GC content 0.42
exon number 2
gene id tpbga
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14475476 ~ 14479077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATGGTTCTCTTTCTCATGTTAATCAGCTCCTGCCTCTCACTGCTCTACACGTGGCTTGTGTGAGATGCAGAGGGAGCTGAGCGCGCGGAGAGGTCATTCCTGAGTTCCCCGGTTCTCCCTGAGAGCAGCAGGGTGCTAGCTCCCAGCTCCAGCAGTCCAGCTCCAGCAGTCCAGCTCCATCCCACCACATTTTCCCAATTATACCCTGTATCCCCGGAGTACAGGGTCAAAGTAACTTGGTTTAGGATGGGTCTAAGACCATTCTGCTGTTTCATTCAGACCTAGTAGGCATTTACTGCTTTGAGGGGAAGTAATTGTCATACTAAATCTGTTATATTGCATGCTGTGGCTGTATTTCTCCCTGAAGTTCATTGAATCAAAGAGCTGGGCCACAATCAGCAAGGATACGGAGCCCACTCTGCCTCTCTACCCACAGGGAGCTTGTGAAGAATGTGGTTGCCTTTCTCTACAAAGCATTCCAGTGCGAGGATAACCTCCTCTAAGCTTACCACGGAGCCACCGAGAAATGCACTTCCTTTGTGCCAGataaacagaatgaaagaatgaaaagggGGATCTTTCGAGAAAGGAGACCAGCTGTGGAAATCTCTGGTCCTCTTCTCCTTCCTTTTTTCGGAAGAAactttactgtgtttttattcctctcatttTTATTGTCAGAATGATGAAAACCAGCCCTGCGAGAGGGTTGCTGAAGACAGCAGTGCGCCTGTTGGCTGTGTGAAGGCACAGCCTGGCTCAGCTCCTAGTAACTTCAGCAGCTTTTTGTGTTTAGGAGATTTTTACAGTGATAAGATGCAGATGAACCTGGGATGGATTTGGTTCAGATGTTTTATGTGTATGGGACAGAATTCGCCAAACGTTCTTTGTGTACTAGAACCCAAAGGCATGGGCTTGGATGTCATGGTTTTGTacttattttataaaaacaaatccagTGGATATGCATAGTCAAGACATTTTAAACCTGAAACTATTACTTGGTCTGCTCTAAACCACTTTGGTCATGTaacttcatttaaaagtagGATTAGTCTGTATCTCGGAAACTGACCTGGCTCCATAAACCATTACAGTACATTCACTAGTACAACATTTGCTGATTTTgactttaaatattcatttgtgCCTGAAGCTCCTCATTGTCATAAAAGCTTTTGTCATCCAAAGTGGTTTAACGTTTCTCTGTTCTTGACGACTTATTTAACAAGTACATGCCATGCTGTCAAACTGCAGTTCATTAACCAAATATGAAAGTCTCCAAAAGAGAAATTATGACttgaaatatggaaatatggaaattttgaaatccaaaatatttttggaGTCTCTATGTATGTGATGCATTGAATGAACAAATTGGATGGCTTCCACAAAGGCAGTTTCATCTGCAttcttaataaaatgttgtaataAGTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481315 lncRNA downstream 89830 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 146280 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA downstream 146280 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA downstream 160646 14313739 ~ 14314834 (-) True G405701
XR_004577551.1 lncRNA downstream 283725 14183486 ~ 14191755 (-) True LOC117596429
TU481546 lncRNA upstream 140010 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA upstream 140699 14619338 ~ 14654751 (-) True G405901
TU481553 lncRNA upstream 166214 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 209384 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 221629 14700268 ~ 14704312 (-) True G405917
XM_026928455.2 mRNA downstream 4662 14460392 ~ 14470818 (-) False kdf1b
XM_026928456.2 mRNA downstream 4768 14460392 ~ 14470712 (-) False kdf1b
XM_026928453.2 mRNA downstream 4768 14460392 ~ 14470712 (-) False kdf1b
XM_034301783.1 mRNA downstream 4768 14461344 ~ 14470712 (-) True kdf1b
XM_026928454.2 mRNA downstream 4769 14460392 ~ 14470711 (-) False kdf1b
XM_026927893.2 mRNA upstream 3298 14481937 ~ 14491263 (-) True tmem222b
XM_034301474.1 mRNA upstream 73405 14552044 ~ 14586242 (-) True epb41a
XM_026928370.2 mRNA upstream 119856 14598495 ~ 14614761 (-) True zbtb22b
XM_034301734.1 mRNA upstream 144042 14622681 ~ 14637333 (-) True ctdp1
XM_026928369.2 mRNA upstream 173705 14652344 ~ 14670040 (-) True daxx
TU481171 other downstream 355822 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 391634 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 713925 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 713964 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 916860 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_14 other upstream 64578 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 67467 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 488837 14967476 ~ 15013988 (-) True G405961

Expression Profile