RNA id: XM_026927974.2


Basic Information

Item Value
RNA id XM_026927974.2
length 3414
RNA type mRNA
GC content 0.46
exon number 2
gene id tpbga
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14475476 ~ 14479077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaacgTGAGAGAAGGGAAGAGTAGAAGAGAGTAGTTCTTTGTGATTACTTGTAGTTTATTAGGACTACAGAGCCATCAGGTGCCAATAATAATATTGTGCGAAATATTTGAATCCATTTGAATCATTGTACCCCAGagatttgcttttaaaatgtgtagCTAGTCCAGTCCAGGCTTCAGCAACAgactgaggaggaggaagagcagcTGTCTGCTGTGCTCAGAAATCATGGTACTGATCTGAGTCCTGAACAGCACGCGGATTAAAGCCTGCACTTTGAGTTAATTTGCATTTAGTTGCTGTGATTTGTGGATTTTGGACTTGTGTTTCTCTCAGACATGAGTAggtccccctcctcctcctcctcctcctcctctcccctcCTCCAAGCGTGGGTCCAGCGCTGCTGCTTTCATTGCATTGTTCCAGAGGAGTTCAGATGGTTCTCTTTCTCATGTTAATCAGCTCCTGCCTCTCACTGCTCTACACGTGGCTTGTGTGAGATGCAGAGGGAGCTGAGCGCGCGGAGAGGTCATTCCTGAGTTCCCCGGTTCTCCCTGAGAGCAGCAGGGTGCTAGCTCCCAGCTCCAGCAGTCCAGCTCCAGCAGACCCCCGCGTTTGGAGAGGCTGTGCGTGTTTGGAGGAACGCGTGCACTCCGGGACCCGCAACTTTTCCTggatttgttttactttttaaaaggAAGTCATAGGCAGCCGGTCCCGAGcgagtttttttaaacaagcatgTTTGTTCATTCTGTTTAAGCCACTCGATCGAGGTGAACTGAGAGAAGGGCATTTACCTGCTTAATTTTCAGACTTTCCGACATGTTGGTCTTCGTGCTGCGCGTCGCGTTCGCGCTGCTGTGCGTCCACGCTACGCGCTCTGCGTTGTGTCCCGCTGGCTGCGAATGTTCCGAAGCTGCACACACtgtgaaatgtgtttctaaagacCTTCAGGACATACCGACCGGCATTCCTGCTTACACGAGGAATCTGTTCATCACGGGCAACCACATTAGACGAATTGGTCCAGAGTGTTTCAAGGGGCTGGACAATGTGACCACCTTATCACTCAGCAacaacagAATATCTGAGGTGGAGTCTCACACCTTCTCCAGCCTGCGTAACCTCAGATCACTGGACCTGAGCAGCAACCAGCTGGTGCTGATTCACCCAGAGGCCTTCACAATGCACAACCACACGCTGAGAGAGCTGAATTTCAGCCGAGCGCTCTATAACCACTCCTCAGTCACTAACCTGGCCACAGCTCTGCGCTGGAGCAGCCTGGACACGCTGCTTGGGCTGGACCTGTCCAGCAATGGCCTGATCTTCCTACCCCCTCACATGTTCTTTCACATGAGCAGTCTGCGCCGACTGCATCTGGCCAACAACTCCATAGTAGCTATTACCAATGAGACGTTGCTGGGTTTGGAGCACTTAGAAGAGCTAGATCTCAGCCATAACGCCCTTAAAACCTTCAACAAGGAAGGCTTGATGGAGTTGGAGCGCATTCCAAAAGCAAAGTTACACCTTGGGCAGAACCCATACACGTGTACCTGTGGAATTGAGTCGTTCATCACCTTGCTAAACACCTCGTGGGACCGTGTCGTAGATGTGGAGCATCTGGTCTGTGTGTTCCCTGTTGAACTGCGCAACATTTCTTTACTGCTTGTAAGGAAGATGGTGCTGGGATGCCATCACGTAGAGGAGAGCAACAACCTGGCTCTCCAAACATCCTATGTCTTCCTAGGCATAGTGCTGGGTTTTGTGGGCCTAATGTTCCTCTTTGTGCTGTATCTGAATCGGAAGGGTATCAAGAAGCGCATCTATGAAATGCGTGACACCTGCAGAGAGATGTGGGAGGGGTATCATTACCGATATGAGATTGACTCTGATCCCAGGTTGTCACAATTGTCCACCAGTGCAGATGTGTAATTTGGACTACTGGTAGTTTGACCCAAGTTCTTCCAACCCAGTGTCTTTATCTGAAATTGATTTCTAgcaaatttatacataaaggaATTTATGACAAACTCTACATGTGTTTTGTAAATCTATTGTTTTATGTTTTCAGGCACCATTAATACTAGCAACCTGCACACCCATTCTTTTTCATACATCCACCATCTGCTCCAGCTCCATCCCACCACATTTTCCCAATTATACCCTGTATCCCCGGAGTACAGGGTCAAAGTAACTTGGTTTAGGATGGGTCTAAGACCATTCTGCTGTTTCATTCAGACCTAGTAGGCATTTACTGCTTTGAGGGGAAGTAATTGTCATACTAAATCTGTTATATTGCATGCTGTGGCTGTATTTCTCCCTGAAGTTCATTGAATCAAAGAGCTGGGCCACAATCAGCAAGGATACGGAGCCCACTCTGCCTCTCTACCCACAGGGAGCTTGTGAAGAATGTGGTTGCCTTTCTCTACAAAGCATTCCAGTGCGAGGATAACCTCCTCTAAGCTTACCACGGAGCCACCGAGAAATGCACTTCCTTTGTGCCAGataaacagaatgaaagaatgaaaagggGGATCTTTCGAGAAAGGAGACCAGCTGTGGAAATCTCTGGTCCTCTTCTCCTTCCTTTTTTCGGAAGAAactttactgtgtttttattcctctcatttTTATTGTCAGAATGATGAAAACCAGCCCTGCGAGAGGGTTGCTGAAGACAGCAGTGCGCCTGTTGGCTGTGTGAAGGCACAGCCTGGCTCAGCTCCTAGTAACTTCAGCAGCTTTTTGTGTTTAGGAGATTTTTACAGTGATAAGATGCAGATGAACCTGGGATGGATTTGGTTCAGATGTTTTATGTGTATGGGACAGAATTCGCCAAACGTTCTTTGTGTACTAGAACCCAAAGGCATGGGCTTGGATGTCATGGTTTTGTacttattttataaaaacaaatccagTGGATATGCATAGTCAAGACATTTTAAACCTGAAACTATTACTTGGTCTGCTCTAAACCACTTTGGTCATGTaacttcatttaaaagtagGATTAGTCTGTATCTCGGAAACTGACCTGGCTCCATAAACCATTACAGTACATTCACTAGTACAACATTTGCTGATTTTgactttaaatattcatttgtgCCTGAAGCTCCTCATTGTCATAAAAGCTTTTGTCATCCAAAGTGGTTTAACGTTTCTCTGTTCTTGACGACTTATTTAACAAGTACATGCCATGCTGTCAAACTGCAGTTCATTAACCAAATATGAAAGTCTCCAAAAGAGAAATTATGACttgaaatatggaaatatggaaattttgaaatccaaaatatttttggaGTCTCTATGTATGTGATGCATTGAATGAACAAATTGGATGGCTTCCACAAAGGCAGTTTCATCTGCAttcttaataaaatgttgtaataAGTGTCCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481315 lncRNA downstream 89826 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 146276 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA downstream 146276 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA downstream 160642 14313739 ~ 14314834 (-) True G405701
XR_004577551.1 lncRNA downstream 283721 14183486 ~ 14191755 (-) True LOC117596429
TU481546 lncRNA upstream 139572 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA upstream 140261 14619338 ~ 14654751 (-) True G405901
TU481553 lncRNA upstream 165776 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 208946 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 221191 14700268 ~ 14704312 (-) True G405917
XM_026928455.2 mRNA downstream 4658 14460392 ~ 14470818 (-) False kdf1b
XM_026928456.2 mRNA downstream 4764 14460392 ~ 14470712 (-) False kdf1b
XM_026928453.2 mRNA downstream 4764 14460392 ~ 14470712 (-) False kdf1b
XM_034301783.1 mRNA downstream 4764 14461344 ~ 14470712 (-) True kdf1b
XM_026928454.2 mRNA downstream 4765 14460392 ~ 14470711 (-) False kdf1b
XM_026927893.2 mRNA upstream 2860 14481937 ~ 14491263 (-) True tmem222b
XM_034301474.1 mRNA upstream 72967 14552044 ~ 14586242 (-) True epb41a
XM_026928370.2 mRNA upstream 119418 14598495 ~ 14614761 (-) True zbtb22b
XM_034301734.1 mRNA upstream 143604 14622681 ~ 14637333 (-) True ctdp1
XM_026928369.2 mRNA upstream 173267 14652344 ~ 14670040 (-) True daxx
TU481171 other downstream 355818 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 391630 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 713921 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 713960 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 916856 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_14 other upstream 64140 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 67029 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 488399 14967476 ~ 15013988 (-) True G405961

Expression Profile