RNA id: TU481546


Basic Information

Item Value
RNA id TU481546
length 278
lncRNA type read_through
GC content 0.47
exon number 2
gene id G405900
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14618649 ~ 14686310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgttcttccttggaccacttttggtaggtactaaccactgcacaccgggaacaccccacaaggcctgctgctttaaagatgctctgacccagtcgtctagacatcacaatatggccgttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttccaacacatcaacttcgagaactgactgttcacttgctgcctaatatatccctcacctttacaggtgccactgtaacgagataatcagtgttattcacttcatctgtcagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481349 lncRNA downstream 140010 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 232999 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 289449 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA downstream 289449 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA downstream 303815 14313739 ~ 14314834 (-) True G405701
TU481557 lncRNA upstream 1713 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 13958 14700268 ~ 14704312 (-) True G405917
TU481577 lncRNA upstream 60538 14746848 ~ 14748447 (-) True G405929
TU481579 lncRNA upstream 63444 14749754 ~ 14753292 (-) True G405930
TU481572 lncRNA upstream 118871 14805181 ~ 14806859 (-) True G405924
XM_026928370.2 mRNA downstream 3888 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 32407 14552044 ~ 14586242 (-) True epb41a
XM_026927893.2 mRNA downstream 127386 14481937 ~ 14491263 (-) True tmem222b
XM_026927974.2 mRNA downstream 139572 14475476 ~ 14479077 (-) True tpbga
XM_026928455.2 mRNA downstream 147831 14460392 ~ 14470818 (-) False kdf1b
XM_026928308.2 mRNA upstream 173944 14860254 ~ 14867598 (-) True gnb3b
XM_026928434.2 mRNA upstream 211300 14897610 ~ 14917917 (-) True si:ch211-264f5.6
XM_026928222.2 mRNA upstream 244833 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA upstream 244833 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA upstream 244833 14931143 ~ 14964811 (-) False cica
trnat-ugu_15 other downstream 72471 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 75360 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 498991 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 534803 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 857094 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 281166 14967476 ~ 15013988 (-) True G405961

Expression Profile