RNA id: TU481565


Basic Information

Item Value
RNA id TU481565
length 4024
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G405917
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14700268 ~ 14704312 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTAATGGGTGCTTGTTTTATGAAAGAAGAGGACTATTACACTTTGTGCATATTTCAGAAGACCTTAGTGTGACAAACTTAGCACAAAACAATATTAGAAAGCACAAAGATTCCCatgatttttatgcattgtgtaaTTCTTTACAAATGTTGTCCTGGTCTAACAAACACCGCATACTATGCATGCTCATTAATGGCAGAGAACTGATGTTGCACCAGATTTTTCCGTATAGCATCATTTCAGGTCTAACAGGTGAATAAGAATGTTCACTTTGTAGAGTAAAAATAGTGGACCACAGAGAAGAGTTAGGGTCAGTCTTGGCAAAATGCAAGGTGACAATCAAACAAATCAGTCCCGCTAAATCACTACAAACCGCCGTCAGGAGATCCACTACAGTCTGCTTCACAGGCCAGGGTACAAATTCTTCCCAAACACTTCTGATCAATTCAGTTTTGCACAGCCACGATGTACTACTGGTGCAACTACACAGATTTTCTCACGTTTAAGAGTGCACACTTCCGTTTCCGACAGCAGCTCGTCAGGACCAGCGTCCACAGTAAGGTTAAGAGTGATGAGGTGCCGCATTACACAACCTTCCTCACCAGAACTTCAAAATACCATTGAtggaaacagaacagaaaaaatgtGCACTTCTAACAGATTAAATTAAGAGAGTGAATTATGAATTTTTTAAGCCAGTGCAACTATTAAACCAGAAACAGGACCTCCTCGAAAAACCTGAAATTAGATAACATCAAAATATATCCCGTGTTTGCCCTATTGTCCGGAGATCGCTAGCTctaatcctgatgatgccacagccatccgtggtcTTGAGCCAggggagcaaaactggccgcgctctctgggtgggaggggcatactctctctctctcctgtcaatcacagcgacactagccaatcatgggtgtctgtgagctcatgtatgcggaagagggtagatagcgctttcctctgagtatgAGTTACGTTAgtttcacgtgtctcagaggaagcacgtgtcaGCCTTCACCCTTCCGGGTTGGAAGCTGTCGTGGGAGAGCAgagagctgactggtgggtgacaaaattagggagaaaatggagtttaaaaatgtttgtgaaaaaATAATCCTTGGGAAAATGACAAATTCCAGTATTTCCAAATACATTCACAATCTTGGAACGTTCTGGTTTATCtgtatttttcttcctttgttACTGACTGAATAATTTCCAGGACATTTGTAAATGAAGTTCATGCATTGTTAAATCATAATACAGAGCTGAATCAGCAACAAGGCCTAAATTATGTAATGCAGGATGAAGTTACAGAGAGAAGCGTAATGAATTCTCAGCTACTCGACCGAGGAACAACTGCAGGTCATTGCTTTGGTGAAATTCGTGCCAGACAGACACTTAGTTTCGAGCTTGGCCtgtgcacacattcacagaatTAAGAAGACAAAGCATACAGTATTAATATATTTGCCTTTCTACAAATAGATGCATAGATTGCCAAGATGCTGGTTTTGACTGTTAAACCATACAAAGtgaattaattcatattaaCAACTGAATTTAGCTATGAAAgggcaagctttttttttttttttaactaatctATAAAATAAAGGTGTTTCTGTCGGCTAATGTGAGAAAAGCACAGACACCATTATGGATGGAATGTAGAACCTGTCAAGCCCCTCACAGGACTTAACCTACTGACCTggttttttattactatttttaaacaccatataatgtgtgagagagagagagagagagagagagataagagaatGTCACATTTGGcacatgaaaaatataaaaaagtgatTGGATTCACATATTGTACatcacagtatacacacatttttcaaaccgAACCTGGGGACAAGGTGTGGGTCTGGGGTACGTTTGGTTTTAAAACGTAGCAGGTAATTTCCCAAGCACTGGACCACATGATAGATAAACTGAGCCATGGGCAGATGTGGGAGTACATAGTTAAAGAACATAAAGAAGGAAGGAGGGGTAATCACCACCCACTAAAGACCCCAAATGACATTAAAACAGCCACGTCTTTAAAGGGCCTGCTCCAGGACATGATCAAAAACACACGTCCATTGGACTACAATCATTCCACATAGATTTGTTCATTAAGAACCTGGCTAGAATTTCACAGGAACCTCACGAGACAGCACCTGAATTACTAATCTGCACATAAACACTGTTGCTGTTAAACTGTACGGTCACCTGTTACACACACGTCTGCTGCTGTAACCCTGCACTCACCCCTGCAGCCACACGGCGCGAGGAAGCTGCCAGAAGTCATTCACTTAGAGCTGCTGATGTCAGGTGACACTCGGCGAAGCAAACGTTAGCAGCGTGAAGTGGGCGGGGCAAGAGACGCAACAAAGAGGAGCACAGTCGAGAAGAAGTGGAGCAATCTGGCAAGGGACTGTGCCACGTTTCTTTTTTCTGGATTGTGAAACCgtgttttttggtttattttattcctaGCTCCTAATCGCTGTGCTGCCACAAGCTGAAGTGTTTACCCAGAATGCAACagtgctggtgtttttttttttaagcccaGGCAGAAATTGTGAAGCATAAAATGTTGTCTTCATTCTGATACATAGCACAGAAGCATTTCCctcaagaattttatttttagtgggAAGACATTAGATTTGTGATCAAACGGGTGCGTTTATATACGTCCTGTAGCTAAGCTTGTGTGAATATCACAACAATGGCAGTAAcctgaaaatacagaaacaccCACAAACACCCAGGGTAtagtagagaaagaaaaaaaaagtcactggcGGTGTAGCATGAAGGAGCAAGCACACCAgatttttgtgaatttatttgCCAGGGTTGAGCAAAATCAGATTATGATTAAGGACAGTCCTTGAAGGAAACTAGTGATTTGGTGAACAGCTAACCTTGCTGATGCTGACTATTCTTTTCAGACTGCTAAGTGCCTTTAGCGTGTTAGCTCATTAAACAGAATATTATTAGGAGATTCATATAGCTAGTTTGTAACAGCTCTTCAGCTCCCGCTAACCAATTCCATGGACATCCTGCTGTATAAAACAGGGAAACAGTAATACAGTGATAACAGGCAGTTACTCCGTGTCGAGTCTTCCTGAAAGACAGGACTCCAGCACCGTgctcttgttttctattggcccACAATTCTATTCCAAGATTTGCAGATTCATGGGGTTAAAGTTCATCGACATGAACTCGGCACAAAAAGCAAATTCGGAGACGGTAGATAAGGAGAAATAAACTGCCACAGGAAGcaaattcttttctttccccTGCATAGCATGTCCTCTTCCATTCAAGTGAACTGGCTCTTTCACCAGGCAGGTTTTATTCGCATCAGGCGTGACCGCCGCGTTAGGGTTACGACGAGTGATGAAACTTCACGTCCTGATCATGAGAGCTGTGCATTCAGCTCATGAGCTTTTCGAGCTGTAGTGAGAAAAGAAACGTACCAGCTGTAATTTTCTCGTAgcagataaaaacacacaatgctGAGCACCATTATCAATACAAAGGCTCTGAAAGTGGAAgtgtaaaactgaaaacaatCTTGAAAAGCCTTATTTGCAAAATACGAATATCTCTCGGCGTGTCCCCGATGTAAAATTTCCCCTCTTCGTTTTCTGAGAGATTAAAGTCTTTTTGGCGCAATACTAGCGTAGGAGACGACGCgggagggaaaagaaaaggagagaataaAGGAAGGTGTAAGCAGGAGATTGAACAGACACAGTGAAGCCCCAATGTCCAGGCTACCGGTACACCCTGGTGCAAACCAGATACAACTGGCTAGAAAGTGGTCCAGATTAGGTCAGCTGATGGGGAGCCTCCAGCATCTCCATGAGGAAGGTGTCAATTGGGGTATCGCCAATCAGCTTGAAGAAGAACAGGTGTTCCAGACATTTCAAACCAATGGAGCGCAATGCTGGCAGTCGGAGGAGGAGCTTGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481546 lncRNA downstream 13958 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA downstream 45517 14619338 ~ 14654751 (-) True G405901
TU481349 lncRNA downstream 221629 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 314618 14378892 ~ 14385650 (-) True G405707
TU481287 lncRNA downstream 371068 14304939 ~ 14329200 (-) False G405681
TU481577 lncRNA upstream 42536 14746848 ~ 14748447 (-) True G405929
TU481579 lncRNA upstream 45442 14749754 ~ 14753292 (-) True G405930
TU481572 lncRNA upstream 100869 14805181 ~ 14806859 (-) True G405924
TU481627 lncRNA upstream 314374 15018686 ~ 15019240 (-) True G405967
TU481636 lncRNA upstream 344409 15048721 ~ 15049178 (-) True G405976
XM_026928369.2 mRNA downstream 30228 14652344 ~ 14670040 (-) True daxx
XM_034301734.1 mRNA downstream 62935 14622681 ~ 14637333 (-) True ctdp1
XM_026928370.2 mRNA downstream 85507 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 114026 14552044 ~ 14586242 (-) True epb41a
XM_026927893.2 mRNA downstream 209005 14481937 ~ 14491263 (-) True tmem222b
XM_026928308.2 mRNA upstream 155942 14860254 ~ 14867598 (-) True gnb3b
XM_026928434.2 mRNA upstream 193298 14897610 ~ 14917917 (-) True si:ch211-264f5.6
XM_026928222.2 mRNA upstream 226831 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA upstream 226831 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA upstream 226831 14931143 ~ 14964811 (-) False cica
trnat-ugu_15 other downstream 154090 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 156979 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 580610 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 616422 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 938713 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 263164 14967476 ~ 15013988 (-) True G405961

Expression Profile