RNA id: TU481617


Basic Information

Item Value
RNA id TU481617
length 473
RNA type TUCP
GC content 0.59
exon number 2
gene id G405961
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14967476 ~ 15013988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCCCCCGCAGTCTTCATGCTCTTCTTTAACCAGCCTTCAGCTCCGAGCAAACAAACTCCTCGCTAACTTTTCCCTTTCAgctcactctctcctctcctcctctcctcctctccgtctctccgtctctcctctACTCCACTCCTCCGCTGTGCCTCATGGATGTGGATGTGTGACTCCAGCAGAGCCGCACTCGTGTCCGGGCGGCGGCAGCAGGCGGGCCGGGGCCGGGGCCGGGGCCGGGGCGAGGCGGGGAGGCAGAGCGCTTCCGCGGGGTTACTGTGTGCCTGTGCGGGCGCCGGGGCCTCAGCGCTGCTCGCTCAACTACTGATAGTTTGGTCGCGTTACGGAGCCGCACCGCGTCATTCTGACGGTCAGAACACACCGTGTCCGGAGagtaaagtatataaatatataaatctctctctgtgtgtagtgtctgagtttctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481553 lncRNA downstream 1365 14644853 ~ 14966111 (-) True G405906
TU481572 lncRNA downstream 160617 14805181 ~ 14806859 (-) True G405924
TU481579 lncRNA downstream 214184 14749754 ~ 14753292 (-) True G405930
TU481577 lncRNA downstream 219029 14746848 ~ 14748447 (-) True G405929
TU481557 lncRNA downstream 246570 14688023 ~ 14720906 (-) True G405909
TU481627 lncRNA upstream 4698 15018686 ~ 15019240 (-) True G405967
TU481636 lncRNA upstream 34733 15048721 ~ 15049178 (-) True G405976
TU481641 lncRNA upstream 37701 15051689 ~ 15051897 (-) True G405981
TU481642 lncRNA upstream 37967 15051955 ~ 15052188 (-) True G405982
TU481643 lncRNA upstream 38599 15052587 ~ 15052844 (-) True G405983
XM_026928222.2 mRNA downstream 2665 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA downstream 2665 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA downstream 2665 14931143 ~ 14964811 (-) False cica
XM_026928226.2 mRNA downstream 2665 14931143 ~ 14964811 (-) False cica
XM_026928223.2 mRNA downstream 2665 14931143 ~ 14964811 (-) False cica
XM_034301470.1 mRNA upstream 59681 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA upstream 59681 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA upstream 59681 15073669 ~ 15136752 (-) True LOC113534955
XM_026927874.2 mRNA upstream 151200 15165188 ~ 15206951 (-) True atp1a3a
trnat-ugu_15 other downstream 421298 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 424187 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 847818 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 883630 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 1205921 13759761 ~ 13761555 (-) True s100a11

Expression Profile