RNA id: TU481636


Basic Information

Item Value
RNA id TU481636
length 458
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G405976
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15048721 ~ 15049178 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctgactctctgatcagcaaggtgtttccacccacagaactgtctctcactcagtgtttttgtttttcgcaccattctgtgtaaactctagagactgctgtgtgtgaaaatcccaggagatcagcagtttctgaaaacctcaaaccagcccatctgacaccaacatccatgccacagttaaagtcacagagatcacactttttcttcattctgatgtttgatgtgaacattaactgaagctcttgacctgcatctgcaagagtttatgcactgtgctgtgACATCCAACAAATGCCTCAATGTGACCAAATAAACAAAGACTTGGCATCTTCTCTGCATGGTTCTGCCTCTGGTTTTGGCCGTGACCAGCAGAGCCGACCCGAGACCGAGTTCACTTCGGCCTTAACGGAGGCAGAGCATCTGTGGTCCTGAGGAATTTACCTTTCAGAGACCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481627 lncRNA downstream 29481 15018686 ~ 15019240 (-) True G405967
TU481553 lncRNA downstream 82610 14644853 ~ 14966111 (-) True G405906
TU481572 lncRNA downstream 241862 14805181 ~ 14806859 (-) True G405924
TU481579 lncRNA downstream 295429 14749754 ~ 14753292 (-) True G405930
TU481577 lncRNA downstream 300274 14746848 ~ 14748447 (-) True G405929
TU481641 lncRNA upstream 2511 15051689 ~ 15051897 (-) True G405981
TU481642 lncRNA upstream 2777 15051955 ~ 15052188 (-) True G405982
TU481643 lncRNA upstream 3409 15052587 ~ 15052844 (-) True G405983
TU481714 lncRNA upstream 158023 15207201 ~ 15207531 (-) True G406054
TU481740 lncRNA upstream 207624 15256802 ~ 15257054 (-) True G406078
XM_026928228.2 mRNA downstream 83910 14931143 ~ 14964811 (-) False cica
XM_034301470.1 mRNA upstream 24491 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA upstream 24491 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA upstream 24491 15073669 ~ 15136752 (-) True LOC113534955
XM_026927874.2 mRNA upstream 116010 15165188 ~ 15206951 (-) True atp1a3a
TU481617 other downstream 34733 14967476 ~ 15013988 (-) True G405961
trnat-ugu_15 other downstream 502543 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 505432 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 929063 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 964875 14081372 ~ 14083846 (-) True npy

Expression Profile