RNA id: TU481642


Basic Information

Item Value
RNA id TU481642
length 234
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G405982
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15051955 ~ 15052188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggcaaggctggcctgttagggcgggacggtgtccatcccactcgggaaggtgctgctctcatttcttgtagcatagcacatagtctcagaacaggcctagttaatcagtgacaatccagggccaaggccagggagcagacaagcaggctaaaccgaccgtctgctagctgcactgagtcgtcactattgagactgtgtctgttccccgagctaaacaaaattagagacatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481641 lncRNA downstream 58 15051689 ~ 15051897 (-) True G405981
TU481636 lncRNA downstream 2777 15048721 ~ 15049178 (-) True G405976
TU481627 lncRNA downstream 32715 15018686 ~ 15019240 (-) True G405967
TU481572 lncRNA downstream 245096 14805181 ~ 14806859 (-) True G405924
TU481579 lncRNA downstream 298663 14749754 ~ 14753292 (-) True G405930
TU481643 lncRNA upstream 399 15052587 ~ 15052844 (-) True G405983
TU481714 lncRNA upstream 155013 15207201 ~ 15207531 (-) True G406054
TU481740 lncRNA upstream 204614 15256802 ~ 15257054 (-) True G406078
TU481741 lncRNA upstream 205537 15257725 ~ 15257945 (-) True G406079
TU481745 lncRNA upstream 219485 15271673 ~ 15272249 (-) True G406083
XM_026928228.2 mRNA downstream 87144 14931143 ~ 14964811 (-) False cica
XM_034301470.1 mRNA upstream 21481 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA upstream 21481 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA upstream 21481 15073669 ~ 15136752 (-) True LOC113534955
XM_026927874.2 mRNA upstream 113000 15165188 ~ 15206951 (-) True atp1a3a
TU481617 other downstream 37967 14967476 ~ 15013988 (-) True G405961
trnat-ugu_15 other downstream 505777 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 508666 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 932297 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 968109 14081372 ~ 14083846 (-) True npy

Expression Profile