RNA id: TU481740


Basic Information

Item Value
RNA id TU481740
length 253
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G406078
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15256802 ~ 15257054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGGTCAAAgtcaccaatgatttgttgatgGCTTCTGACTCTGGTACAACATCTATTCTTATTCTTCTTGATCTAAGAGCCGCTTTTGATACTGTTGATCACAGTCTATTACTTACTCATCTTGAAAGAGTGTTTGGTGTGTCTGGGACTGCCTTGAAGTGGTTGAGGTCTTATTTTACTGACCGCTCCCAGTTTGTTTCTATGGGTGGTTATAGGTCTGAGATTAGCTCtgtctccactggtgttcctcAG

Function

GO:

id name namespace
GO:0048882 lateral line development biological_process
GO:0048884 neuromast development biological_process
GO:0048925 lateral line system development biological_process

KEGG:

id description
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481714 lncRNA downstream 49271 15207201 ~ 15207531 (-) True G406054
TU481643 lncRNA downstream 203958 15052587 ~ 15052844 (-) True G405983
TU481642 lncRNA downstream 204614 15051955 ~ 15052188 (-) True G405982
TU481641 lncRNA downstream 204905 15051689 ~ 15051897 (-) True G405981
TU481636 lncRNA downstream 207624 15048721 ~ 15049178 (-) True G405976
TU481741 lncRNA upstream 671 15257725 ~ 15257945 (-) True G406079
TU481745 lncRNA upstream 14619 15271673 ~ 15272249 (-) True G406083
TU481748 lncRNA upstream 15954 15273008 ~ 15273429 (-) True G406086
XM_026927874.2 mRNA downstream 49851 15165188 ~ 15206951 (-) True atp1a3a
XM_034301470.1 mRNA downstream 120012 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA downstream 120050 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA downstream 120050 15073669 ~ 15136752 (-) True LOC113534955
XM_026928227.2 mRNA downstream 291991 14931962 ~ 14964811 (-) False cica
TU481617 other downstream 242814 14967476 ~ 15013988 (-) True G405961
trnat-ugu_15 other downstream 710624 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 713513 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 1137144 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 1172956 14081372 ~ 14083846 (-) True npy

Expression Profile