RNA id: TU481748


Basic Information

Item Value
RNA id TU481748
length 422
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G406086
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15273008 ~ 15273429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcaccggcccctgcctcgacagggcgtccgctcccacgttgagatgaccagggatgtaggccgctctcaatgagaggaggttcccttgggaccacacaaggatctggagcgccagcctgtaaagggggcgcgaacgcagacctccctggcggttgatgtaagagaccaccgtcgtgttgtcggtgcgcaccaacacgtggcggcctcttaggtctgggagaaagtgtttcagagctagaaacacggccagcatctccaggcggttgatgtgccaagtgagatggcggccgctccacagaccacgggcaggacggccactcatgaccgctccccatccggtgagggacgcatccgtcgctagcactacgcggcgaccaggagctcccaggaccgggccctgagacaagaacccaggttctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481745 lncRNA downstream 759 15271673 ~ 15272249 (-) True G406083
TU481741 lncRNA downstream 15063 15257725 ~ 15257945 (-) True G406079
TU481740 lncRNA downstream 15954 15256802 ~ 15257054 (-) True G406078
TU481714 lncRNA downstream 65477 15207201 ~ 15207531 (-) True G406054
TU481643 lncRNA downstream 220164 15052587 ~ 15052844 (-) True G405983
XM_026927874.2 mRNA downstream 66057 15165188 ~ 15206951 (-) True atp1a3a
XM_034301470.1 mRNA downstream 136218 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA downstream 136256 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA downstream 136256 15073669 ~ 15136752 (-) True LOC113534955
XM_026928227.2 mRNA downstream 308197 14931962 ~ 14964811 (-) False cica
TU481617 other downstream 259020 14967476 ~ 15013988 (-) True G405961
trnat-ugu_15 other downstream 726830 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 729719 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 1153350 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 1189162 14081372 ~ 14083846 (-) True npy

Expression Profile