RNA id: XM_034301779.1


Basic Information

Item Value
RNA id XM_034301779.1
length 1401
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113524042
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1872919 ~ 1875037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAATCTCACATGAGTGACGGTGGTGAGCTAGAAGAGAAATAACAGCATACAGAAGGAGATTAAGATGACCCAGCTTTCTTCATCTGAAGTTGTGCTGAAGAACATAGCTGAGGCTGTTATTGTTCCATTAAAAGATGGCATCTCCTCCCTGAACAGAGTCTACGAGGCCCTGATTAAGGCAGATGTCCATCCTGTTACTGGGCAATGCTCCAACTATGACTACATCAGACAGCAGATAGTGCAGGCTCATCTGCACCTGCAGAGGTCAGAACAGACGGCCAGTTCAGGGTTAAAGAGTCTGGATAAAAGCTTAGAGTGGCTTACACAAGACGAGGGAAAACTCCAACGTGAGAAGAGTAGCACCGAGACTCATTTACAAAACTTGAGAACAGAGCAGGCATCTAATGAAAAATTACTCAGGGACTCTCAGGGAGCTCTGGAGCAGGCCAGGGGAAATCTGAATTCAACAAACCAGACACTTCAGGATCAGGAAAGCAGGAGACACAATGCTGAAATTGTCACAGGTGTTGGGGCGGGGCTGTTTGCTATACCAATCATTGGATGGATCGCAGGTTCTGCCATGTTGATTGCTGGCACAGTTGAATTGGATCAAGCAGCACATGCTATCAGAGTGGCTGAAGAGGAGGTGAGAAATTCTGAGACTGAAgtggaaaaatacaaacataaagTATCTGACTACGAGTCCAAGATTTCCCAGACCTGGTGTGACATCAGACAGAAAGATGacaagctgaaacacacacgtGAAGAAATCCAGAAGGTGAAGAAGCAGATCGAGTCTGTAGCTGAGTTCCAGCAGAAAGTGAGAAGAGCTGTCCAGCTCCTGGGTGCTCTGAGCGGGAGGGCCAGCGTGGCTGAACATCAGACTCGCAGATTCATCTTCCAGGAGCCTGTGATGAGGGTGATGGAGGATGTCATGAAGGCCACAGAGCAAATCACAGGGAATGAGCTCCTCTATTACAATGACATGCCAAGGCTGATCCATCAGATGAAGGAGAACAACCAACGACTGGCAGCCATCTGTGCCTCGTAGAACAGCTCTACGAATAACACCACTTAACACTTATGTTGTTTTTAACAGATATTTGTTGAATAATGGATATTTGGTGAATTCTTCAATCAGTATAATCTTGTGCTACTTTACAATACTGCATGTCAGAGTTTCGtacaaataaagtataaaaaaaattgttatttttcataGAAAATATGTTTAAACTGATAGTACATGATGCTTGTAAGACTAAACTATAGACAGCAGGCTTACTTTACTCTTGTTTATGCTGAAAGAGTCATTTTCAAGAGCATTAAAAACCATTAAATATGAGctcaaaataaatacactaaacaGATGTTGCAATAAAGCTTGTTATAtcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473234 lncRNA downstream 8076 1832816 ~ 1864843 (-) False G398890
TU473237 lncRNA downstream 37623 1781558 ~ 1835296 (-) False G398890
TU473238 lncRNA downstream 37623 1825597 ~ 1835296 (-) False G398890
TU473015 lncRNA downstream 146391 1726120 ~ 1726528 (-) True G398751
TU473004 lncRNA downstream 156456 1715036 ~ 1716463 (-) True G398743
XR_004577585.1 lncRNA upstream 162 1875199 ~ 1876420 (-) True LOC117596467
TU473273 lncRNA upstream 76884 1951921 ~ 1952184 (-) True G398922
TU473276 lncRNA upstream 81009 1956046 ~ 1959562 (-) True G398925
TU473294 lncRNA upstream 123049 1998086 ~ 1998681 (-) True G398942
TU473287 lncRNA upstream 156131 2031168 ~ 2032632 (-) True G398935
XM_026910160.2 mRNA downstream 11962 1858882 ~ 1860957 (-) True LOC113524043
XM_034301780.1 mRNA downstream 49150 1821683 ~ 1823769 (-) True LOC117596466
XM_034301455.1 mRNA downstream 63066 1808522 ~ 1809853 (-) True LOC117596405
XM_034301781.1 mRNA downstream 104170 1766704 ~ 1768749 (-) True LOC113524064
XM_026910171.2 mRNA downstream 143802 1726901 ~ 1729117 (-) True LOC113524053
XM_026910212.2 mRNA upstream 41253 1916290 ~ 1932126 (-) False LOC113524085
XM_026910211.2 mRNA upstream 41253 1916290 ~ 1932126 (-) True LOC113524085
XM_034301809.1 mRNA upstream 59469 1934506 ~ 1951096 (-) False hspbp1
XM_034301808.1 mRNA upstream 59469 1934506 ~ 1951096 (-) True hspbp1
XM_034301727.1 mRNA upstream 87693 1962730 ~ 1970432 (-) False LOC117596454
TU473233 other downstream 8076 1730090 ~ 1864843 (-) True G398890
TU472900 other downstream 281190 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 410849 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 410849 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 555283 1276653 ~ 1317636 (-) False LOC117596427
trnad-guc_31 other upstream 373123 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 497259 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1086676 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 1294297 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 1328253 3203290 ~ 3275955 (-) False G399489

Expression Profile