RNA id: XM_026910160.2


Basic Information

Item Value
RNA id XM_026910160.2
length 1440
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC113524043
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1858882 ~ 1860957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcacaaactaggaataccatcagtccaaaactctgttggggaggcaATAGACAAGCTCTCAGACAACACAACGTTTTTGTGTGCTAATTtcagtactttaggaagaggaaAGTCTTTAGACattgtttgaagacagccagtgactcagctgttcgaaCATCTAGGGGAAactcattccaccaccttggtgccagagaagagaagagaagagtcaAAAAAAGGAGCTCATCATAAAATCTCACATGACTGACTGCAGTGAGCTAGAAGAGAAATAACAGCATACAGAAGGAGGtcaaatttcacactttaatTAGAGGTCTGTCTTTAAGAAACACGGTGACAAGATTAAAATGACCCAGCTTTCTTCATCTGAAGTTGTGCTGAAGGACACAGCTGAGGCTGTTATTGTTCCATTAAAAGACGGCATCTCCTCCCTGAACAGAGTCTACGAGGCCCTGATTAAGGCAGATGTCCATCCTGTTACTGGGCAATGCTCCAACTATGACTACATCAGACAGCAGATAGTGCAGGCTCATCTGCACCTGGAGAGGTCAGAACAGACGGCCAGTTCAGGGTTAAAGAGTCTGGATAAAAACTTAGAAAGCCTTACACAAGACGAGGGAAAACTCCAGTGTGAGAAGAGTAGCACCGAGACTCATTTACAAAACTTGAGAACAGAGCAGGGATCTAAtgaaaaattacacagaaaatCTCAAGGAGCTTTGGAGCAGGCCAGGAGAAATCTGAATTCAACCAAACAGACACTTCGGGATCAGGAACGCAGGAAAAAAACTGCTGGAATCGTCACAGGAGTAGGGGTTGGACTGTTTGCTATACCTGTCATTGGATGGGTTGCGGGCTCTGCCATGGTGATTGGTGGTGCAGTTGAATTGGATCAAGCAGAGCATGCTATCAGAGTGGCTGAAGAGGAAGTGGAGAAGTCTGAGACTGACATGAAAAAATACGAAAGTAAAGTGTCCAAATACAAGTCCAAGATTTCCCAGACCTGGTGTGACATCAGACAGAAAGATGACAAGCTGAAGCAGACACGTGAAGGAATCCAGAAGGTGAAGAAGCAGATCAAGTCTGTAGCTGAGTTCCAGCAGAAAGTGAGAAGAGCCGTCCACCTCCTGGGTGTTCTGAGCGGGAGGGCCAGCGTGGCTAAACGTCAGACTCGCAGATTCATCCTCCAGGAGCCTGTGATGAGGGTGATGGAGGATGTGATGAAGGCCACAGAGCAAATCACAGGGAATGAGCCCCTCTATGACAATGACATGCCAAGGCTCATCAATCGGATGAAGGAGAACAGCCAACGACTGGCAGCCATCTGTGCCTCGTAGAACAGCTCTACGAATAACTACACTTAACACTTATGTTGTTTTTAACAGACATTTATTGAATAATGGATATTCTGTCAATTCTTCAATCAGTATAATCTTG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473237 lncRNA downstream 23586 1781558 ~ 1835296 (-) False G398890
TU473238 lncRNA downstream 23586 1825597 ~ 1835296 (-) False G398890
TU473015 lncRNA downstream 132354 1726120 ~ 1726528 (-) True G398751
TU473004 lncRNA downstream 142419 1715036 ~ 1716463 (-) True G398743
TU472992 lncRNA downstream 166966 1691472 ~ 1691916 (-) True G398732
XR_004577585.1 lncRNA upstream 14242 1875199 ~ 1876420 (-) True LOC117596467
TU473273 lncRNA upstream 90964 1951921 ~ 1952184 (-) True G398922
TU473276 lncRNA upstream 95089 1956046 ~ 1959562 (-) True G398925
TU473294 lncRNA upstream 137129 1998086 ~ 1998681 (-) True G398942
TU473287 lncRNA upstream 170211 2031168 ~ 2032632 (-) True G398935
XM_034301780.1 mRNA downstream 35113 1821683 ~ 1823769 (-) True LOC117596466
XM_034301455.1 mRNA downstream 49029 1808522 ~ 1809853 (-) True LOC117596405
XM_034301781.1 mRNA downstream 90133 1766704 ~ 1768749 (-) True LOC113524064
XM_026910171.2 mRNA downstream 129765 1726901 ~ 1729117 (-) True LOC113524053
XM_034301521.1 mRNA downstream 168201 1683598 ~ 1690681 (-) True mief1
XM_034301779.1 mRNA upstream 11962 1872919 ~ 1875037 (-) False LOC113524042
XM_026910159.2 mRNA upstream 11962 1872919 ~ 1875008 (-) True LOC113524042
XM_026910212.2 mRNA upstream 55333 1916290 ~ 1932126 (-) False LOC113524085
XM_026910211.2 mRNA upstream 55333 1916290 ~ 1932126 (-) True LOC113524085
XM_034301809.1 mRNA upstream 73549 1934506 ~ 1951096 (-) False hspbp1
TU472900 other downstream 267153 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 396812 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 396812 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 541246 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 577111 1276653 ~ 1281771 (-) False LOC117596427
trnad-guc_31 other upstream 387203 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 511339 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1100756 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 1308377 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 1342333 3203290 ~ 3275955 (-) False G399489

Expression Profile