RNA id: XM_026910171.2


Basic Information

Item Value
RNA id XM_026910171.2
length 1504
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113524053
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1726901 ~ 1729117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTTCACCCCACCTCTGCTACAGTTTAGTATAAAAGGAGCTCATCTTAAAATCTCACATGACTGACTGCAGTGAGCTAGAAGAGAAATAACAGCATACAGAAGGAGGTCAAATTTCACTCTTTAATTAGAGGTCTGTCTTTAAGAAACGCTGTGTCAAGATTAAGATGACCCAGCTTTCTTCATTTCAAGTTGTGCTGAAGGACACAGCTGAGGCTGTTATTGTTCCATTAAAAGACGGCATCTCCTCCCTGAACAGAGTCTACGAGGCCCTGATTAAGGCAGATGTACATCCTGTTACTGGGCAATGCTCCAACTATGACTACATCAGACAGCAGATAGTGCAGGCTCATCAGCATCTGCAGAGGTCTGAACAGACAGCAGGTTCAGGGTTAAAGAGTCTGGATAAAAACTTAGAGTGGCTTACACAAGATGAGGGAATACTCCAGTGTGAGAAGAGTAGCACCGAGACTCATTTACAAAACTTGAGAACAGAGCAGGCATCTAATGAAAAATTACTCAGGGACTCTCAGGGAGCTCTGGAGCAGGCCAGGGGAAATCTGAATTCAACCAAACAGACACTTCGGGAtcaggaaaacaggaaaaaaactgcTGAAATCATCACAGGTGTTGGGGCGGGGCTGTTAGTTATACCAGTCATTGGATGGATTGCAGGTTCTGCCATGCTGATTGGTGGTGCAGTTGAATTGGATCAAGCAGCACATGCTGTGAGAGTGGCTGAAGAAGAAGTGGAGAAGTCTGAGACTGACGTGAAAAAATACGAAAGTAAAGTGTCCGAATACGAGTCCAAGATTTCCCAGACCTGGTgtgacatcagccagaaagatGACAAGCTGAATCAGACACGTGAAGAAATCCAGAGGGTGAAGAAGCAGATCGAGTCTGTAGCTGAGTTCCAGCAGAAAGTCAGAAGAGCTGTCCACCTCCTGGGTGTTCTGAGCGGGAGGGCCAGCGTGGCTGAACATCAGACTCGCAGATTCATCCTCCAGGAGCCTGTGATGAGGGTGATGGAGGATGTGATGAAGGCCACAGAGCAAATCACAGGGAATGAGCTCCTCTATTACAATGACATGCCAAGGCTCATCCATCAGATGAAGGAGAACAACCAACGACTGGCAGCCATCTGTGCCTCGTAGAACAGCTCTACGAATAACTACACTTAACACTTATGTTGTTTTTAACAgatatttattgaataattgaataatggATATTCTGTGGATTCTTCTATCAGTATATTCTTGTGCTACTTCTCATAACTGCATGTCAGATTTTGTACAAAGTATAAAAAAGCAATGATTCTTTGTCatagaaaatgtgtttaaactgATGCACGGTGCTTGTAAGACTAAATTATAGACAGCAGGcttactttacttttgtttatgCTGAAAGAGTCATTTTCAAGAGCATTAAAAACCTCTAAATATGAGCACCAAGTAAATACACTAAACAGATGTTGCAATAAAGTTTGTTATATTTA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473015 lncRNA downstream 373 1726120 ~ 1726528 (-) True G398751
TU473004 lncRNA downstream 10438 1715036 ~ 1716463 (-) True G398743
TU472992 lncRNA downstream 34985 1691472 ~ 1691916 (-) True G398732
TU472993 lncRNA downstream 34985 1691665 ~ 1691916 (-) False G398732
TU472986 lncRNA downstream 47219 1677333 ~ 1679682 (-) False G398730
TU473237 lncRNA upstream 52441 1781558 ~ 1835296 (-) False G398890
TU473238 lncRNA upstream 96480 1825597 ~ 1835296 (-) False G398890
TU473234 lncRNA upstream 103699 1832816 ~ 1864843 (-) False G398890
XR_004577585.1 lncRNA upstream 146082 1875199 ~ 1876420 (-) True LOC117596467
TU473273 lncRNA upstream 222804 1951921 ~ 1952184 (-) True G398922
XM_034301521.1 mRNA downstream 36220 1683598 ~ 1690681 (-) True mief1
XM_026910204.2 mRNA downstream 77854 1639569 ~ 1649047 (-) True cbx7a
XM_034301643.1 mRNA downstream 135167 1565795 ~ 1591734 (-) True st13
XM_034301739.1 mRNA downstream 188228 1522507 ~ 1538673 (-) False LOC113524072
XM_034301738.1 mRNA downstream 188228 1522507 ~ 1538673 (-) True LOC113524072
XM_034301781.1 mRNA upstream 37587 1766704 ~ 1768749 (-) True LOC113524064
XM_034301455.1 mRNA upstream 79405 1808522 ~ 1809853 (-) True LOC117596405
XM_034301780.1 mRNA upstream 92566 1821683 ~ 1823769 (-) True LOC117596466
XM_026910160.2 mRNA upstream 129765 1858882 ~ 1860957 (-) True LOC113524043
XM_034301779.1 mRNA upstream 143802 1872919 ~ 1875037 (-) False LOC113524042
TU472900 other downstream 135172 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 264831 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 264831 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 409265 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 445130 1276653 ~ 1281771 (-) False LOC117596427
TU473233 other upstream 973 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 96224 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 519043 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 643179 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1232596 2961713 ~ 2964157 (-) True G399490

Expression Profile