RNA id: XM_026910199.2


Basic Information

Item Value
RNA id XM_026910199.2
length 1072
RNA type mRNA
GC content 0.49
exon number 6
gene id mrps7
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2003622 ~ 2007277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATTAGCGCACCAGGCAGTATTATCGAACACCACACATGGGGTCCTTCTGAATCGCAGTTTTCAACATGGCGGCCTCCATCGCGAAGCTGTTAGCGCCTTGGACTCCCcgGTTGTGTCCGGTTCGGTGGACTCGGTATAACCCGTACTACCTAGAACCTGAGCCTCGTAAGGAAGTCTACTCCATCCCCGAGTCAGAGCTCAGCCCTGAGcagaaggaggaaaaggagCTGAAAACTCTGAGACCCATCAAAGCAGCCAAGTCCAGCGCCACCAGCTCGCCGTTCGATGATCCAATGATCAGCAAGTTCGTCAACACGATCATGCAAGATGGCAACAAGGTCCTGGCACGAGGAATCATGACACAGACTCTGGAGATGATCAAGAGGAGGCAGGTGGAGAAGTACCACCGCGCTCCGACAGCCGAGAAGGAGACGATCGAGTGTAACCCGTACGCCATCTTCCACCAGGCCATAGAGAACTGCAAACCCATCATCGGCCTGGCCAGCATTCAGAAAGGAGGCAGGAACTACCAGGTTCCTGTTCCTCTAACGGATAAGCGTCGCCGTTTCCTGGCCATGAAATGGATGATCACAGAGTGCAGAGACAACAAACACCGGCGCACGCACATGTACGAGAAACTCTCGCAGGAGCTCCTCGCTGCTTTCAACAACGAGGGGAACGTCATTAAACGCAAACACGACTTGCACAAGATGGCTGAAGCCAACCGGGCGTATGCGCACTACCGCTGGTGGTAACAAGGGAACAGCTTTCAGGGTCCTCCTCCTCACACACCCTGCGTTTCAGTAGTGTTTAGGACAGGATTGGAACACAGCCTTGGACTCGTTATGTTGTGTTTCTACAGTTCCACAGGAGCATCAGAACCTGTGTGATctaaaatcttaaataaaccGGATACACAATACAAACGTGTTTGGACTCCACAAGATTTAATCTGCGACTCCTCAGTCATTCTGATGCttgtttaatgtaataatgtaaaccTAAATATATGaaagtgtaatgtgtgttttttttctattataacagttaataaattaaaattaaaaacc

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K02992 RP-S7, MRPS7, rpsG; small subunit ribosomal protein S7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473294 lncRNA downstream 4941 1998086 ~ 1998681 (-) True G398942
TU473276 lncRNA downstream 44060 1956046 ~ 1959562 (-) True G398925
TU473273 lncRNA downstream 51438 1951921 ~ 1952184 (-) True G398922
XR_004577585.1 lncRNA downstream 127202 1875199 ~ 1876420 (-) True LOC117596467
TU473234 lncRNA downstream 138779 1832816 ~ 1864843 (-) False G398890
TU473287 lncRNA upstream 23891 2031168 ~ 2032632 (-) True G398935
TU473308 lncRNA upstream 33024 2040301 ~ 2040923 (-) True G398953
TU473380 lncRNA upstream 255327 2262604 ~ 2268036 (-) False G399016
TU473379 lncRNA upstream 259029 2266306 ~ 2268036 (-) False G399016
TU473376 lncRNA upstream 259413 2266690 ~ 2347812 (-) True G399016
XM_034301787.1 mRNA downstream 21066 1979258 ~ 1982556 (-) True jmjd8
XM_034301727.1 mRNA downstream 33190 1962730 ~ 1970432 (-) False LOC117596454
XM_034301728.1 mRNA downstream 33190 1962730 ~ 1970432 (-) False LOC117596454
XM_034301726.1 mRNA downstream 33190 1962730 ~ 1970432 (-) True LOC117596454
XM_034301729.1 mRNA downstream 33190 1962731 ~ 1970432 (-) False LOC117596454
XM_034301693.1 mRNA upstream 729 2008006 ~ 2011992 (-) True tmem220
XM_034301671.1 mRNA upstream 347632 2354909 ~ 2365507 (-) True mmd
XM_026910059.2 mRNA upstream 390139 2397416 ~ 2402161 (-) True tmem100a
XM_026910081.2 mRNA upstream 491702 2498979 ~ 2507141 (-) False cbx2
XM_026910080.2 mRNA upstream 491702 2498979 ~ 2507140 (-) True cbx2
TU473235 other downstream 122564 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 138779 1730090 ~ 1864843 (-) True G398890
TU472900 other downstream 411893 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 541552 1461324 ~ 1462070 (-) False LOC117596459
trnad-guc_31 other upstream 240883 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 365019 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 954436 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 1162057 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 1196013 3203290 ~ 3275955 (-) False G399489

Expression Profile