RNA id: XM_026910221.2


Basic Information

Item Value
RNA id XM_026910221.2
length 2161
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113524091
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1115634 ~ 1124106 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCATTTGTGTTGACTGAGCTGACAGAGGACCTTTTCCACATCTTTACTGAAAACTACCAGGATATCAAGGAACAAGGAAGCCATGAATTCCCAAATTGCAAAGAAAAATCAAAGCCTCACCACAGCTGAGGAAATGAGAAACCAAACCAAGCTTGTGATGCAGCCGTATGCCAACTGGGAGGAGTATCTGACTCCTGCTCCACTCTCCATAGCCATCCTGGGAGAGCTGGTCTTCATCTCCTCCAAAACAGATTTCTCCATCAACAAGAACCCACCTAAAGATGGCTACAAGTATATCAAATACCCAGATTCATTTCGTGCCTGCCTCATGCAGGTGTGTAACTCTGGCTGGGGGGCTTTCAATGAGGCCCATAAGAACATGGATCAGATTAGACTCCACACCATGGCAGTTCCAGATTACATGAAGACGGCTGTGAAGATCCTTTTCCAAGGCAATGATGAGATTGTTGAAGCCCACCTCCCTGACCAGCTGGAGAACATTCGTGTCATTGCAGATGATTGTCTTGAGTTGGCcaatgcaacagaaaagcggTTCACTGATGTCATCAATATTATCCAGGAACTGCTAGAAGCATGTGTAAATGCTGAGCACTTTTATGGGGAGGAGCTGGATGCTATCAAGAAGAAATTGGATGAGGCCAAGATGAGGAAACAGTCATCAGAAGAAGCTACTAAACGCTCAGAGAAAGCAATGAAAGCCATGGAAGAGCAACTTAAGGAAGCACATGCAGGTTACAAAGAAGCAATGGATTCACTACCTGGTGGATGGGAGATGATTGGTATGGATTTTGTTGCAGGCTTGACTGAGAGTGTCACAACTCTTGTTAATGGAGTAACAGCTGTGATTACCCGGCCAGTGAAACTACTCTGTCAAGCTTCCAGAACAATTGCTGATACAAAGCATCACATTAAAGATAAAGAATCTGCTGTTGATGGTATtgatgtaattaatatttatagcaAATCTGCAGAAATCCTGATGTGCACAGTGAAGGTACAAGAGGTTGTGAAGGACAACACTATTAATTGGAAAGACTTGTATGATCAAAAGAATAAAGCTACATTAACAGATTTCCAGGCAGATCAGTTCAAAAGAATCAAGAAAGGTTTAGAAAAAACCCCAAACTGCAAAGCAAAAACTGATGCCCAAAACATATGTGATGAGGGCATTGCAATCTGTGCAGAACTAGCAAAGTATGCACCAGAGGGGAAATGtgaagaaaccaaaacaaatgagCTGATTGAAAGGATCAGAAATCTGACTGAATCAGCTCGAAGTTTTGACAGCAAAAGTAAAGACGTCACAAAGTCTCCTTCCCTGGCTCCCAAACCACCAATGATGTATAAAGAAGAAAGTAAATCTGAGAAGATGAGTGTTTCACAAAGAGCATCAGAGAATGCCAGGTTCCGCATAGAGCAGAGCCGCGCTCAACTGGACAAGACCAGAGAGATCTATGAGAAGAGtgtagagaacatggagaaGAACCAAAAGGAGCTGACTGAAATCCTGATCACCATGAGGAACTGCGAGGTCAAAGAGATAGACTTTAACACCACTATACAAATGCTGGTCAAAGGTATGGATGCCATGGGGAGAGTGAAGGAGCAGTGGGAGAAGATGGTGCGCTTCTTTCAGATGGTGTCCAACATCGTGAAAACCTGCCTGAgcagaacccttaaagattttGTCTCCACATCTGAGAAGACACAATCACTTTCCTATAACGCAAAGCTCTTCTGCAAAGACCTGCTCTACAATCAAGCCTTTCAAGCCACTAACATCGCCAGCCTCGTCCACATGATCTCAGCAACCTACACAGAGGTTTCCACCAATCACATCATGGATCGTGTCAGCTCTCTGGGAAAACTGATGGCCATGGACAAGGAAAAGCCTGAGTTTCTTTCTGAGCGTCTGCAGTTACAGGAATCCTGTGATGAGGCCCAGAAAGCCATCTTACACCTCGTCCTCAAGAACAAGAATGAGTTTGAAAGGAAGACTGCTGCAAGACTGGAGAAGATTGACAAAGAGCTGCTCGCTATTCTCCCTGCTGCTGCTCCAGAAGAGATAAAGAGCATTCAAGCAGCTGTTCAAAGTGGATTCGCAGAAGAAGAGGAAGCAGACTACGCCTGAGTGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472575 lncRNA downstream 13287 1025420 ~ 1102347 (-) True G398437
TU472569 lncRNA downstream 31803 1014943 ~ 1083831 (-) False G398433
TU472570 lncRNA downstream 31803 1026342 ~ 1083831 (-) False G398433
TU472568 lncRNA downstream 31803 1082817 ~ 1083831 (-) True G398433
TU472587 lncRNA downstream 37606 1076828 ~ 1078028 (-) True G398446
TU472600 lncRNA upstream 12531 1136637 ~ 1139668 (-) True G398459
XR_004577541.1 lncRNA upstream 64447 1188553 ~ 1191451 (-) False LOC117596417
XR_004577540.1 lncRNA upstream 64447 1188553 ~ 1191446 (-) False LOC117596417
XR_004577539.1 lncRNA upstream 64447 1188553 ~ 1190249 (-) True LOC117596417
TU472659 lncRNA upstream 127937 1252043 ~ 1326018 (-) True G398509
XM_034301448.1 mRNA downstream 3725 1108693 ~ 1111909 (-) True LOC117596399
XM_026910201.2 mRNA downstream 161434 951202 ~ 954200 (-) True fmc1
XM_034301676.1 mRNA downstream 209259 891920 ~ 906375 (-) True fam234b
XM_034301679.1 mRNA downstream 225332 887935 ~ 890302 (-) False LOC117596444
XM_034301594.1 mRNA downstream 276193 833892 ~ 839441 (-) True LOC113527139
XM_034301450.1 mRNA upstream 49294 1173400 ~ 1176207 (-) True LOC117596401
XM_026910219.2 mRNA upstream 118681 1242787 ~ 1250542 (-) True LOC113524089
XM_026910207.2 mRNA upstream 131567 1255673 ~ 1267846 (-) False zgc:65811
XM_026910205.2 mRNA upstream 131567 1255673 ~ 1267846 (-) True zgc:65811
XM_026910206.2 mRNA upstream 131567 1255673 ~ 1267824 (-) False zgc:65811
TU472483 other downstream 161673 951206 ~ 953961 (-) False fmc1
TU472541 other downstream 195131 919264 ~ 920503 (-) True G398408
XR_003403678.1 other downstream 201282 914198 ~ 914352 (-) True LOC113536357
XR_004577595.1 other downstream 205411 910069 ~ 910223 (-) True LOC117596482
XR_004577594.1 other downstream 207855 907625 ~ 907779 (-) True LOC117596481
TU472656 other upstream 152547 1276653 ~ 1281771 (-) False LOC117596427
TU472657 other upstream 152547 1276653 ~ 1317636 (-) False LOC117596427
XR_004577580.1 other upstream 337218 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other upstream 337248 1461354 ~ 1462070 (-) False LOC117596459
TU472900 other upstream 444897 1569003 ~ 1591729 (-) False st13

Expression Profile