RNA id: XM_026911528.2


Basic Information

Item Value
RNA id XM_026911528.2
length 6104
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113525087
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 341071 ~ 350569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCAGCCTCAGCTCTTACACAGCAAACCGCAGACCAGGTTTCACTTCCTAGAGAAGCTAACTTAAAGCAAACTTAAAACAACAGACACACAGCAAGAGGCAGCACAAAGCTGAAAAACTGTCTTTACACAgTAACCATGGAGTCTGAAGACTAATCAGTCCAACATGGTCAATTTGGAAGCTCCAAGTTCATTTTAACAAACCACATTGCCCAGTGTCCACTTTCTGAAAAGTAAGTGAacacagaaaaagaggaaaacacgAAAAGAACACCTGTAACATCAAGTCCTAGTGTTTCATCAGCCAGTAAAATGgCCCAGCAGGAGACCAGTGTCAATATTGTGCTGTTTGGAAACACCTCTGCAGTCCACTTTGGACCTGAAAATATACTACTTGGACAAGATCAACCCATTCTAGAAAACACTGAGTTCTGTCAGATTGTCCCAGTATCAAGAATGGTATCAGGACgtaatgtttctgtcatcaacatTCTTGGTTTGGAAGAGACTGAATTCTCCCCACAGTTCACCAGTAGACTTGTCAAAGAAAATGAAATCCATGCTTTCATCTTTGTGCTTCAAGTGAACCGATTAACAGACGCTAATAAATTGGGACTTGAATGGCTGAAAAATACATTTGGAGAACGTGCTCTTTCCTTTGTGATGATTCTGTTCACTTAcgagagagaggaggagtgtGACACTATTGTAGATGACTTGAAGAACAACACTGTTCTAGAGCAACTGATGAAGAAGTGTGGAGGCAGATACTGCACATGCAGCAAGAGCATGAacaaccaatcagaaatgagaacaCTGCTGGAGAAGATTGATCGCCTCATCTCTGAGAACAATCAGCGCTGCTACACTGCTGAGAACTACAACACATCCTTCAGAGGCCTGCAAGACAGACAAAGTCAGCAGAGagCCTTTAATAGGCTTCTGGTACAAGAAGAGGTGGATATCAAAGAGGATCTAACAAAACAGCCAAAAGTAAAATCACCAGACCGTAATGCAGCAGATTGCAGACCAGATTCTTCTGAAGAATTGAAGGAACTCTTTTCAAGAGTATTAGGAAATCACAACCAAATCATAAAACCTGCAGATATTCTTCAAATAATAAAACCATTATTACAATACCAAGAATCTTCATTCCATTTAGCTTTCCTACAGAAGCTGCTGATGGTGAACTACAAGGCAAGATACATTTCAGTTAATAAACAAACCAGGGAAGAGGATGACTTTTCACCAGAACCAGTGGATGATAATGATCAGAAGGACAGTTTGTCGTTTCTTGACATAGACTTTGCATCATCTTCTGCTCCagtaaacaataaacagattgttCACCCCATGGATGTCCAGATGGCAGTGTTTCACTGCTCAGATCATTTCCTAAAGCAGCTAATAGTGAATAAACTGGCTCAGTGTCAGTACGCTCTGCCTCTGCTGGTGCCCAATCCCTTCACCAGAGAGATCGAGTTTCCTCTGTGGACCCTTCGCCAAATCAGAAAGAGCTGGAAGACCACTGACTCCTCTGGTAAAGTTATCAACAAAACCCAGGTGATTTCTGAAGCTGAAACTCCAATGGTGGCTTTCTTCAGGTTCGGCTCTGTATCTTCATCCAAGTCTCAGCTGATGAACAACTTGATCAATGAGAAACATCACACGTTCTTCTACCGGGACTGCCCTGGAAGCAGCAGTAACCGGCTCCTGATGGACGGAGTGGTGGAGATTGCGTGGTACTGCCCATCTGGGAAGGAAACGGATTATTTCCCTGACTGTGTAGCATTCTGTAATCTCCATGGTGATGCAGAAACTAATAAAGAGCAACTGGATATCCTGACTGAAATGTCCTCAGTGAATGTTGTACTTTTATCTGAACAAATGGATACCAAAAATAGCGTAATACTACGAAATCTTTATAAAAGCCAAAAGCCACTAATTTTCTTACTCACCAACAGTAATTCATGTGTAGATCAGATCAAAAAGCTGAAATATAAAATTGGTCTTAAACAGAGAAATCAGTCAGATTTATCCGAAGATCTCAGAAACACCCTCAAAAAGTGTTTGACATTAGCTCCTAAATTCAGACTTGAAAATGTGAGTGCAAGCTGGAAGATCAGAATAGATGAGGAAGATGATAAATGtcagaaggggaaaaaagtagcTTCCCAAATTACAAAGTTATTTCATGGAATGGAACTGTCCAAAATGAAGGAAACATATCTGCCCTGTCAGGGGAAACTGTGGCATGACTGGTGccagaaaaacaaagaattcCATCGACTTCAAGGAACAAACATAGAGAGGaaaaggtgtgaaaaacaaactgaaatgaaGATGATTCGTAAGCAACAGCATGAGTATGGAGTCACAAACCTGATGAAGATGTTTATTGACACACTGAATTCATCAGAAGGAAATGACAAAGACTATTTTCTGAAATGGCTTGTAATCCTGCTTGACAACTACACCACTGATGAACTCTCTAGACTTAGGGATTCACAACTTCAGGACATATCAAAACAGCTGAAGGCTGCAGCTTTTGGTTTGGAACACATCCTAAGGGAGATGAGTCAGATATATGagtcatttatttctgtacaaacacatAAGAAAGGATCTTTAAAAGAAGATTTCCCATGTCTTCCTAAGCTTGGAGCAGATGTCATGCTCTCAGGATATCCACTGGAGCTGATGGATGGTGATGCTGCTCATGTTCCTCTGATCTGGGTTTCAGCAGTTCTAGATGAACTTGTGAAGATACTGGGAGACCAGAGAGTGTTTGTGCTGTCAGTTCTGGGGATTCAGAGCTCTGGGAAATCCACCATGCTGAATGCCATGTTTGGACTCCAGTTTGCTGTCAGTGCTGGAAGGTGCACCAGAGGAGCCTTCATGCAGCTGGTCAGAGTGTCGGAGGAGATGAAAGAAGAGCTGAAGTTTGACTACATTTTAGTTGTTGATACTGAAGGTCTGCGAGCTTTAGAGCTGGCTGGGAAGACAACCATACATCATGACAATGAACTCGCCACATTTGTTGTTGGTCTTGGAAACCTGACCTTGATCAATATCTTTGGAGAGAATCCAGCTGAGATGCAGGACATCCTTCAGATTGTTGTTCAAGCCTTCCTGAGGATGAAGAAGGTCAGACTAAATCCCAGATTCATGTTTGTCCATCAGAATGTTGGAGACATCACTGCTGGAGAAAAAACTATGGAAGAAAGGAGACGCTTACAGGAAAAATTGGATGAAATGACAAAGCTAGCAGCTATAGAAGAAGACTGTGATGCTCAATGTTTTAGTGATATCATTTCATTTGATGTACAAAATGATGTTAGGTACTTTTCACAGCTCTGGGAGGGCAGCCCGCCCATGGCACCACCAAACCCAGCATACAGTGAAAATGTTGATGAGCTAAAGAGAAATATCTTTTCAAATATCAAGACAAATCATGTAATGAGTCTTTCACAGTTCAAATCCCATTTAAGCAATTTATGGAATGCACTGCTGAATGAAAACTTTGTGTTTAGCTTCAAAAACACTTTAGAGATTGCAGTGTACAGGAAATTAGAGAATGAATATTGTAAATGGACCTGGAGCCTTAGAAGTGCCATGTTGGTAACTGAGAACAAACTGCTTAACAGAGTCAACAATGAAAAGTACCCAAAGATTGAGGAAAATGACATCATGGCAGGCATGAAAGACACAAAGTTGGATGTGGAAAAATCAATCAAGAAGTTCTTTGATGAAGACGAAGATAAAGAAACTTTGATCCAATGGCGAGAaagatttgaaagaaaaattttGGATCTTAACAATGACCTTGTAAAAGGAACAAAGAGAAAGTTAGATAAAGTTGCAAGTCTGAAAATTGCAAGGGAAAAGATAGACCGGGAAAAGACTATGAGGGAAAATAAGCTTTATAAACAGAGCAAAGACCTAgcaacaattttaaaaagtaaagaaactGATGAACATAAACTCAGGACAGAATTTGAAGATGTCTGGGACAAGTGGCTGACTGAGGTGACACAAGATGTACCTTCAATTGACAACATCGATATTTGGGGAGATGTAACACAGACACTGTCAGAAAGTTATGAGGTAAACCTTGTCTTTGAGAGACAGAATAAGGCTGCATACAAAAAGCTTGATTCCTTAGGAGATTACTCAGACTACATTATTCTAAACAAACATCAAGAGCCACATCAAGAAGATCTACAGTCAGAGAAACATGTGGAGGGAGAAGATACAAGCCCTGGTGCACTCGTTCATACAGTTGGAGACAGTCCATCTGAGGAGAACCACTGCAGAACCATTACTCTAACCTCTGAAGATAACAACTTATTTAGTGCACTGATTGGAAGAATGATCAAAGACACTGAAGAAGAAATTCAGAGAAAACCCATTGCAGAGCAGGGATACAGTCAGATCTACATCCCAGAAATAATAGCCTCCATCAAAAAACAAGTAAGAGTGCACCAAACTCAGACCTCAAAATACACACTTAAGAAGGAATTCACAGTGGATCTATGTCTGTGCGTGTGCAGCTTTGCAGCCAACCAATTCAATGATCTTCATAATAAATTCAGGGACGCAAATGATGTAGGAGTGTACCTGGAGAAACAGAAGCCTCAGTACTTCAACATCTTCAAGAACTACTACAATGGTGCGACCTCGACAACAGTGTTTGGTGAATTCATTGTGAATAAACTTGAGCCGTCTATACTGCAGGCAGCATACGACCAAACTGCCATCGATGTAGCCGAGAAAATGAAACGTGATGTTCCAGCGTTCAGTGGAAACAGGTCAAATCTGGAAAAACACATTCTGACATCACTAGCGGAAGAGGAAAACTTTGAGAACTATATTGAATATCTTCACAAGCCCAAAGaacattttagtcattttattgcccaggaagtaaataaatacctaCTTAAAGACAAATGTCAAGAGGTTCTGGAAACTATCAAAACTAACATAAAGTCTAAGGGAAGGTGTGTGATGGAGGCTGTCAATAAAGCAACAAAGGAGGTCAATAATGGTGATGTCAACAGGTGGCTGCAGTATTTGTCCAAAGAGCTGAAAGATGAGCTTCAGTTCAAAGAAGAATCATGTCTTGAGCAGAAAGAAATTACAGACCTTGGCTTTCTTCAAGAGGTTGTAAATAAGGGCCTGACTGACACCATGGCAAAGTTATGCAGTGAATTCAAAACCATTTCTGACCTCAAACAAGAAATGTTCAGAAAGACACCACACAAGGTTCTGATTGAACACCTCTGTCAGTGCTGCTGGGTTCAGTGTCCATTCTGTAATGCCATCTGTACCAACACAATGGAGGATCATGATGGAGATCACCGTGTCCGTTTCCATCGCAACTGTGGAATCAGTGGATGGTCTTTCATGTTTTCAGAAAACCTTGGAGTTGATTTCTGCACAACTGCTGTTTCAAGTAACTTGTTCTTTCGTACATCTGGTGGTGTGTTTGCTTTTAAAGAGTACAGAAAAGCAGGAGGAGAATATGCCAAGTGGAACATCAGCCCTGACACCTCTGAGGTGCCCTACTGGAAGTGGTTTGTGTGCAGGTTCCAGGAAGACCTGGAAAAGCACTACAAGAGAAAGTTCACAGGGAATGGAGAGATTCCACTTGAATGGAGGGATATCACTAAAGATAGAGCCATTGAAAGCTTAAATGAGTTATAATGTAAACTGGAAGAGATTTTAACTGTCTTTGGTGCTGTAATACCATAGAAATGTGAGAGGTTTTAGTTTCTTTCAGTATTTCCTGgtgtttttggtttcttttaTCAATATTTCCTGTTAGAAGATGTGTTAAGTGTTGCTGAATAGAGAGCTGTTTGCTCGATGATTTTAATATTCtggtcacatttctgatttatcctttaaattatttaaaataattactacTTATCTTCATTTGGACCTCCTTTGGTACAACTCTGTctcatataatatacagtatatataagcTTTGTTGtgcatttaatataatttaaatgtcCGACATTAACACACTTTTGAACAAActgttgtatttatattttgtcaaaaaaatatatatatttctttaagaaACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472224 lncRNA downstream 33662 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 35198 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 35198 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 35198 305279 ~ 305873 (-) False LOC117596423
TU472206 lncRNA downstream 147938 169832 ~ 193133 (-) True G398140
XR_004577543.1 lncRNA upstream 63896 414465 ~ 417319 (-) True LOC117596419
TU472424 lncRNA upstream 244549 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 291833 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 491367 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 497176 847745 ~ 848753 (-) True G398394
XM_034301536.1 mRNA downstream 1722 328861 ~ 339349 (-) False LOC113525084
XM_034301537.1 mRNA downstream 2015 328861 ~ 339056 (-) True LOC113525084
XM_034301539.1 mRNA downstream 2032 328861 ~ 339039 (-) False LOC113525084
XM_034301553.1 mRNA downstream 16357 312408 ~ 324714 (-) True pick1
XM_034301551.1 mRNA downstream 30835 299979 ~ 310236 (-) False plbd1
XM_026911533.2 mRNA upstream 22574 373143 ~ 399186 (-) False LOC113525089
XM_034301540.1 mRNA upstream 22574 373143 ~ 399186 (-) True LOC113525089
XM_026911532.2 mRNA upstream 67448 418017 ~ 459183 (-) False LOC113525088
XM_026911531.2 mRNA upstream 67448 418017 ~ 459183 (-) False LOC113525088
XM_026911529.2 mRNA upstream 67448 418017 ~ 459183 (-) False LOC113525088
TU472228 other downstream 15526 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 30416 310583 ~ 310655 (-) True trnar-ccu_18
TU472265 other upstream 123997 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 389674 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 535133 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 548959 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 557056 907625 ~ 907779 (-) True LOC117596481

Expression Profile