RNA id: XM_026911532.2


Basic Information

Item Value
RNA id XM_026911532.2
length 5819
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113525088
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 418017 ~ 459183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATAATCATGTGATTTCTAGGAAGCTTCGCCCCATGCCCTATAAATAACGGCTTAGTGCTTTCCAGAATCTCCTGCAAACCCAGATCCTTCAGTGCTCAGcctctccttcctctctgtGTCCACTCACTGGTGACGACAGAAGTTCGCTCCATCCACAGAAAATGCATGCAAAAGAAGCCCGAAGGGAAGCTGCTCAAGGCAGTGCAACATCGCAGAGCTGGATTCAAAGCTCCAGCAAGCCAGCAGTGTCAGAGCTGAGGATAATTCTGTTGGGGAAAAGTCTCTCACAGACCCGCAATGTGGGAAACTTCATCCTCGGCAGATCAGCGTTTGAGACTGAAGATCCTCCACATTCAGTAGAACCTCACTGTGAGAGTGTCAGAGGACATGTGGAGGGAAGAGACATCAGCATAATCAGTGCAGCTCATTTATTTGACCCACAACTCTCTCAGGAGGATCTGAATCAGAGAGTAAAAGAGTTTGTTTCAAATTCTGGACCTGGGCCTCATGTATTTTTACTTGTGGTGCAGCCTCATGACTTTACAGAGGAGGACAGAAACCTACTGCGATTCATCCTGAATTCCTTCAGTGATCAAGCCATAAACTACTCCATTGTGATAACAGTAGACGATGCTGCAACAGTGTTACCAAAAGAGAAAAACCAAGACACAAAGAACTTTACCACTTGCCAGAAACAAGAGCCAGCAGAAGAGGGACAGaaaacaatGACTGAACATAAATTAGCAGAAGATGGATCAAtttgtgaagaaaagaaaaagtgtgaaatgaCAAAATCAGAGCAACTGTTTATTACAATTAATCTtaatgaaaagcacaaacaaaaaatgaaaacttcaGATGTTCTTCAAATAACTTCACGTTCATTACACTGGAAGGAGCCTTGTACAGAGAAAGACTTAGTGGAAACCTTTCTACAAAGGATGCTAATGATGGACTACAGAGCAAGATACATTACAACTAAGGAAGACTCCAACAATTCAGAACACACTTACTTAAACACAAGAGATggagaagatgatgatgacttTGCTGATTTTTTATCAAAGAAGACATCTTTGGATATTGAAAGCCATAAATATCCTGTTCACCCCATGGATGTCCAGATGGCAGTGTTCCACTGCTCAGATCATTTCCTAAAGCAGCTAATAGTGAATAAACTGGCTCAGTGTCAGTACGCTCTGCCTCTGCTGGTGCCCAATCCCTTCACCAGAGAGATCGAGTTTCCTCTGTGGACCTTTCGCCAAATCAGAAAGAGTTGGAAGAGCACTGACTCCTCTGGTAAGGAGATCAGTAAAACCCAGGCGATTTCTGAAGCTGAAACTCCAATGGTGGCTTTCTTCAGGTTCGGCTCTGCATCCTCATCCAAGTCTCAGCTGATGAACAGCTTGATCAATGAGAAACATCACACGTTCTTCCACAGACACTGTCCAGGCAGCAGCAAGAACCGGTTACTGCTGGATGGAGTGGTGGAGATTGCGTGGTACTGCCCATCTGGGGAGGAAACAGATTATTTCCCTGACTGTGTTGCATTCTGTAATCTCCATGGTGATGCAGGAACTAATGAAGAGCAACTGGATATCCTGACTGAAATGTCCTCAGTCaatgttgtacttttttctGATCCTGGAAAAGCAACATATAAGGAGATACTACAGAAGCTCTTTAGAGACACGAAGCCACTGATTTGTCTACTTCCAGAGGATGAATCAGGTGTCACTGTATCTAGGAATGGAAAATACAGAATCGGCCTTAAAGACAGAAATCAGTCAGATGTAGCCAAGAACGTCAGAATGACTATAAAAGAATGTCTTTCAAAGTCACCTTCAGTTTTCAAAATTGAAAATTTGTACAAAACTGAAGTGATTACAAAAGATGAAGATGACCCTGAATGCAAGAGAGGGAAAGAAGCTGCAGAGAAGATCATGAGCCAGTTGGAGGGAAATGAAGTGTCCAAATTAAAGGAACAACATCTGCCCTGTCAGGGGAAGTTATGGCATGACTGGTGTGAGATGAACAAAGACCTGCATCGACTTCAAGGGAACAACATAGAAATGCAAAAGAGtagaaaacaaagagaaatgaagCAAATCCGTGAGGAGCAGCATAAATACAGACTCTCTGGTCTTATGGAACAATTCATTTCCTCACTGGATCATCtaggagaaaatgaaaaattattctttttaaaatgggtTGGGATTCTCCTGGACAAACGCACCTCAGATGATCTTTCTGCTCTTCATCACAAATACAATGAAAAGTGGGCAGCAGTTTTAGACCTTAAGAAGAAGCATGATAAATCAGATAAAATGAAGGTGGAGCAAACAGAACTTGAAGAAATTTCAGAAAAACTGACTGCAGCAACCTTTGGTTTGGAACACATCCTCAGAGAGATAGGTCAGATATACGagtcttttatttctgtacaaacaccCAAGGAACGGTCTGAAGAAAAAACCTTGACCTCTCTCCCAAAGCTTGCAGCAGAACTCATGAAATCTGGTCATCCAATGGAGATAATGGATGGTGATGCTGCTCATGTTCCTCTGATCTGGGTTTCAGCAGTTCTAGATGAACTTGTGAAGATACTGGGAGACCAGAGAGTGTTTGTGCTGTCAGTTCTGGGGATTCAGAGCTCTGGGAAATCCACCATGCTGAATGCCATGTTTGGACTCCAGTTTGCTGTCAGTGCTGGAAGGTGCACCAGAGGAGCCTTCATGCAGCTGGTCAGAGTGTCGGAGGAGATGAAAGAAGAGCTGAAGTTTGACTACATTCTTATTGTAGATACTGAAGGGCTTCGAGCACTTGAGCTCGCCGGAAAATCCACTCAACATCATGACAATGAACTCGCCACATTTGTTGTTGGTCTTGGAAACCTGACCTTGATCAACATCTTTGGAGAGAACCCTGCTGAGATGCAGGACATCCTTCAGATTGTTGTTCAGGCCTTCCTGAGGATGAAGAAGGTCAGACTGACTCCCAGCTGCATGTTTGTGCATCAGAATGTCAGTGACATCACAGCTGGAGAGAAAAACATGGAGGGAAGGAGACGTTTACAGGAAAAACTGGATGAAATGACAAAATTGGctgcaaaagaagaagaaagtgaagCTGAGTGTTTCAGTGATGTTATTGAATTCAATGTACAAGATGATGTGTATTATTTTGCTCAGCTCTGGGAGGGCAGCCCACCAATGGCACCACCAAACCCAAGCTACAGCAGAAACATTCAGAATCTAAAGAAAGCCATTTTCAAAAAAGCTGGCGAGTCTCCTGGTATGACTTTCTCCCAGTTTAAATCACGCATCAGTGATCTTTGGAATGCATTACTCCACGAGAACTTTGTGTTTAGCTTCAAAAACACACTGGAGATAGCAGTGTACAGAAAACTGGAGAATGAGTTTGGAAAATGGAGCTGGGCCCTCAGAAGTGCCATGTTAGACATTGAAGAAAAACTTTACAAcagaattgaaaatgaaaaactgaaaagaattGAAGAAAAAGATCTTTATTCTTCCATGGAAAAGGACAAAGAGGAAGTGGACAAATCAGTGAAGAGTTTCTTTGAAGaggacaaagacaaagaaattttAATTCAGTGGAGAGTGAGATGtgaaaacaaaatcacacagCTTCATGAAGACCTTGTCaaagacacaaaacaaaatgtgaatGAAGTTTTACAACAGCAAAAAGCACGGGAGACTTTTGAACGTGAAAGGACACAGTACGATGAAAAACTGTTCAATCTGAGCAAAGACCTCGCTCTGAAACTCAAAAGCACAACAACTAATGAAGAAGTTCTTAAAGATGAATTTGACAAATTGTGGGATAAATGGGTCACTGAACTGACAAAAGACACACCTCCAGAGAGAACTTTTGATTTTTGGGAGGATGCTGTACAGATTCTGTCTGTGGGCAATGAACAAGCTTCTGTGTGGAGGCGGAAATCTCAGCAAGACtacaaacagatagacagactggGAGATTATTCACCTTATATTTCAAAAGTCAAAAGACAGAATGttcttcattattttcctgGCATGAATAAACCTTCTTTTGAAGACAATGATTTAGTAAGGACTCTGACCATAAATGTGATCAAAGAAACCAAGGGATTAATTAAAGAGATATGTAACAAAATTGCCAGACTTGGGTACAAAGACAGCTACATACAGGAAATAACAGACCACGTCAAGAAGAGAGTTGAGCAACATCACAGTGAAAACCAGAGAATTAAGCTCAGAAAGGAATTCACTCTGGATCTCTGTCTTCATGTGTGTGAACTTGCGAGTCACAGATTTACTGAGCGCCATAAACAATTCAGGGATGCAAATGATCCAAGAGTTTATCTGTCCAAGCAGAAACCACAATATTACAGTGTCTTTACAAACTACTGCAGaggagcaacaacaacaaaagtgtTTGGTGAACTGATCTGCAGTAACCTGAGAGAATCCATCCTGCAAGCAGTTTACAATAAAACTGCTATTGATTTGGCAtcacagatcagatcagacaTGCCAGAGTTTAACGGTAACAGATCAAACCTTGAGAAACACATCCTCAAATGtctggcagaggaggagaacTTTGAGAAGTACAAAGAGTACATTCATAATCCCCAAAAGCACTTCGAACACTTCATTACAGAGAAGGTGAATAAGTACATTACTGAAAATAACACCACAGTTCTGAACCTTTTTAAAGGAAATCTAAAAGACAAAATACAGAGAGTAAGAAATGCTGTTCACACTGCAACTGAAGAGGTGAAGAACAGCCGTGGTGATGCAGACATGTGGCTGAGAAGTTTTACCAGTTCACTAAAAGATGAACTGAACTTAAAAGAAATAACCTTCACTGATCACAAAGAAATTACAGACTTTCATTTTCTACAGCAGCTTGTTAGTAAAGGTCTCACTGAAATGATGTCAGAGCTAGACAAAAGCTTTAAACGTGTAAAAGACATCAAAATGGAGAAGTTCAGGAAGAAGCCAGATGAGATCCTGATTGAACACCTCTGTCAATGCTGCTGGGTTCAGTGTCCATTCTGTAAAGCCATCTGCACCAACACAATGGAGGATCATGATGGAGATCACAGCGTCCCTTTCCACAGGGTAGATGGTATCAATGGGACGTATTACAGAGATACAACAAATCTCGATGCTGATTTCTGCACAACACTTGTGCAAAGTTGTAAAGCTTTCTACCCCAGACATGATACAGATGTGTCTGTACCTTTCAAATCATACAGAACAGCAGGAGGAGTTTATGCTACCTGGAGCATCACCCCTGATAATTCACAGCTCGCATACTGGAAATGGTTTGTGTGCAGATTCCAGAAAGACCTGGAAAAGCACTACGAGAAAACATTTCAGGGTAAGGGTGAGATCCCCGGGGAATGGAGAGACTTCACTAAAGAACAAGCTATAGAGAGTTTGGATGAATATATCTGATGAAAGACTCTTCTGAACAGAACCCAGCAGGAACAGCAACGTAATCATGAACCAGTCATAAACAGAGAAACTTTGCCTGTATTAGTGAcaacagaaatgacaaaaaaaatgattagaaaACATTAATTAGATTAAATTTAGAATAatcactatatatacacactgtttcaacttttctctttcttttttcttcttcatgacaacatttaaaaattaatcatgtTATATCAGTGAAAATATTAATCACAGAATGTGCTTGattatgaaatgtatttttttaaataagatgtTCTTGTTTGAGTGTCAATGTtgcaataataaacaatattacaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577543.1 lncRNA downstream 698 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 110608 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 112144 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 112144 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 112144 305279 ~ 305873 (-) False LOC117596423
TU472424 lncRNA upstream 135935 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 183219 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 382753 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 388562 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 391267 850450 ~ 851339 (-) True G398395
XM_026911533.2 mRNA downstream 18831 373143 ~ 399186 (-) False LOC113525089
XM_034301540.1 mRNA downstream 18831 373143 ~ 399186 (-) True LOC113525089
XM_026911527.2 mRNA downstream 67448 341071 ~ 350569 (-) False LOC113525087
XM_026911528.2 mRNA downstream 67448 341071 ~ 350569 (-) True LOC113525087
XM_034301536.1 mRNA downstream 78668 328861 ~ 339349 (-) False LOC113525084
XM_034301441.1 mRNA upstream 14567 473750 ~ 481932 (-) True LOC117596396
XM_026911534.2 mRNA upstream 69078 528261 ~ 561037 (-) True LOC113525090
XM_026911521.2 mRNA upstream 112518 571701 ~ 588652 (-) False LOC113525082
XM_026911520.2 mRNA upstream 112518 571701 ~ 588652 (-) True LOC113525082
XM_034301443.1 mRNA upstream 184865 644048 ~ 645951 (-) True LOC113547081
TU472228 other downstream 92472 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 107362 310583 ~ 310655 (-) True trnar-ccu_18
TU472265 other upstream 15383 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 281060 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 426519 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 440345 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 448442 907625 ~ 907779 (-) True LOC117596481

Expression Profile