RNA id: XM_034301540.1


Basic Information

Item Value
RNA id XM_034301540.1
length 5063
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113525089
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 373143 ~ 399186 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAACTGCCTACAAACCTGGAGGCTTCAGTGCTCAGCCACTGAAGCATCTCTAACAGCTGAACCATCACAAGAAGGTATTGAAGAAATGCCTAGAGGCGGATCTGATTCCTCCAGTTTCACTGTTGTGGTGTTTGGAAACACCTCTGCAGTCCACTTTGGAGATGAAAATATACTACTTGGAGCAGAACATGTTCCTCCAGATCAGGCCCACATCCccagaaaaataaaagtgtcaggATGTGCATTGTCAGTGGTCAACATACTGGACTTACATGAAGGTGATCTGTACATGGACCATGTGGACCACATCACTGGTCAGTTAGTTAATGAAAACAACATCCAGTCCTTCATCTTTGTCCTGAAACTGGGACAATTTACAGATGATGATAAAATGGGACTTGAATGGCTGGAAAGAAAATTTGGAGAACATGCTCTTTCCTTTGTGATGATTCTGTTCACTTACGAGGGAGAGGAGTGTGACACCATCATAGATGACCTGAAGAACAACACTGTTCTAGAGCAACTGATAAAGAGGTGTGGAGACAGATACTGCACATGCAGCAAGAGCATGAACAACCGATCAGAAATGAGAACACTGCTGGAGAAGATTGATGATCTCTTCTCTGAGAACAATCAGCGCTGCTACACTGCTGAGAACTACAACACAGAATTAAAGTTTAAAGAACACCAGCAAGACACGGGGAGGCAGAAAGATGGAATGAAGTATAAGCTTAAAACTGCTGAGGAGACTGAAATCATGACAGATCAAGATCCAGAAGAAGAAATGGACACCCAACCAGTGACTAAGAACCTCTCTGACAAAGAAGAAATCCGCAATCCATCAGACTCTAGAACGAGGAGAAGGAATAGTATGAGCCCACCTCCTGCAATGTCTGCACTGAGAATTATTTTGTTGGGGAAAAGTCTCTCAGAGACCAGCAGAGTGGGAAACTTCATCCTGAGAAGAGAAGCATTTAAGACTGAAGATCCTCCACATTCAGCAGTGCAGCACAGTATCAGAGTGAACAGACGTGTGAAGAAAAGATACATCTCCATCATTAACACACCTCATCTCTTTCACTCGCGACTCTCCCATGAGGAGCTGAGTCAGAGAATAAAAGAGTGTATTTCACTTTGTGAACCTGGACCTCATGCATTTTTACTTGTGGTGCAGCCTCAAGACTTTACAGAAGAGGACAGAAAGCGACTGATATACATCCTGAACTCCTTCAGTGAGCGAGCcataaaatactgtattttgaTCAGGACAGAGAAAACCCTTAAACCTTTACTTCAGAAGCAAGAGAATGATGCTTATCACAGATTAAGGAAGGAATTCAATGTGAGGTACATTTTGAAAGAGTTATTGCAGAATGAGGAGGAATCAGTTGATCAGCTCTTTGAGAAGATTGATAaaattgttaaagaaaatggAGGAGTTCATTTGACATGTGAAGTTTTTGAGAATGTAGAAGAAGAATCTCACAAAtctgcgagagagagagggaaggaaacTCAAGACTTACctgaagacagaaaaaagaagagcaTGTGGGGTATAATGGGAAGTGTTGTACAAAGAGGGATTTCAGCGCTGCAACCAACAGAGAGGAGCATCAAAGAACAGTCTACAAAGAAGTGGGCAGCCCCTGTCATGCCTTTGTTGAAGCCAGATGGATCCGTGAGACTCCGTGGAGACTATAGACTGACTGTGAACCTGGAATCATCATTGGAGCAGTATCCCATTCCCCGAATGGAGGACATGTTTGCAGTGCTATCTGGAGTGTCAGGAAGTTCTTCTTCATTGCCAGAGTTGAACTTGGTGTTGTGTGGAAGTGATGGAGCTCTGAAGGCCTCTATATCAGAGCTCCTACTGGGACAGAGAGGACAGACAGTAGAGtccagctcagtgtgtgtgataaggAAAGGAGAAGTGCGTGGACACCTGATCAGGCTGGTGGAGATGCCTGCTCTCTACACTCAGCTCTCAGAACAGAAAGTGATGCGTCAGACTCTAcactttgtctctgtctgtgatcCTGGAGTTCATGCTTTCATCATCATTCTTCCTGTTGGTCCTCTAGCTAATGAAGATAAAGCAGAAATACAGATGATTCAGAGGATCTTTGGCTCCAGAGTTAATGACCACACTGTAGTCCTTTTCACCAACCCGTATGACAATGATGAAGCTGCAGCTAAATTTGTAGAGCAAAGTTCAGAGACAGAACAACTTCTCAGCATGTGTGGAGGAAGATATATAATCCTGAAGAAGAGTTTAAAGCATGACAGCCTCAAAAAAGTGCCGGCACTGTTGCGTCATGTCACAGAGATGGTGACTGTGAACAAGCTTTATTCTCTCCTGATGTATGTTGAAGCACAGAAAGATGGAGTTAAACAGGTGCTAGAGAAAAGACTGGCTGAAATGGAGAAGACAATCCAGCAACTTAAGACAAAACAACAGCAAGAATGTGCTGAGGCGGAAGCATCAGATCCCAGCTGTCTGAGAATAGTGTTGATTGGGAAAACAGGAAATGGAAAGAGTGCCTCAGGAAACACCATCCTAGGAAGAAAAGAATTCCACTGCAATGTCAGCATGACCTCTGTGACAAAAATCTGCCAGAAGGGAGTTGGAGATGTTCAGGGCAAACCTGTTGCTATTGTTGACACTCCAGGCCTCTTTGACACCACACTAACAAACGAAGAAACAACAGAAGAAATTGTGAAATGCATCTCACTGTCAGCACCTGGACCTCATGTGTTCCTCATTGTGTTGAGTGTGGGAAGAATTACAGAGGAAGAGATGGAAACACTGAATCTGATCAAGACAATGTTTGGTGCTGAGGCTGCTAAATACAGCATAGTGCTGTTTACCAGAGGAGACGATCTGGAAGATCAGACACTTGAAGATTTTGTCAATAGTAGTGGCCATGCAGGTGTTTTAAAGCTAATCCGGGACTGTGGTGGAAGAGTTCATGTGTTtaataacaaagaaaagaaagatcgCACCCAAGTCTATGACCTTCTGAGAAAGATTGAAGAAATGATTGAATTTGACAGAAACAATTACTTTACAAATGAGATGTTTGAGATGGCGGAGATGTCAATACAGCAGAAACAGCAGGAGATACTGAAGGAGAAAGAGGAACAGATGCAGGCTGAAAAGGAGGCACTGGAGGCTAAACATAAGGAAGAACTGGAGCAGATGAAGAGGAgtctggagaaagagagagaacagttgGAAGAGGAAAGACTGAAAAGGGAAAACATgtttaaagagaaagaagaatctTTAAAACAAGAGtatgagaagaaagaagaagaagagagagagagacggagagtgGAGGATCAGAGAAGGgcagaagaggaaaaagagcaaAAGGCAAAGAGGGATCGCCAGTTGGaggaaataagaaaagaaatggaagatcaaaaaaataaatttctcaaACAGCAAGCTGAAAGAgatgaggaagagagaaagagggcagagagagatagaaaagatAAAGAACGTTTTGAACATGAACAGAGGCAAGCAATGGAAGAATTAAAGAACAAGCAGAAAGAAGAgattaaaaagagagaagaggaagaacaaatgagaagaaagaaacaagaagaagagaTGGAACATTGGAAGAGAAAAATTAAGGAGGcagaaaacagtaaaaaagagataaaagaaGATATTGAAAGAAAACTGCAAGAACAAGAGCTGGAATGGAAGGAACAgataagaaaaagagaagaagaatacaggagaacaaaagagagacacgagaaagaacagagagaacaggaaGAAAACCAGGAACAAATGAGGAAACATTTTGAAAGGGAAAGAGACGAAGACAGActtcaaagagaaaaagaaagagaacaatggaaagagagagaaaggagggagagagatcagagaaagagagagtatgaagaaagcaaattaaaaataaagaaagagtatgaggaactggaaaaaaatagaaaggaaGAGTGGGAGAGAAGAACCTATGAGGAcaatgagagaagagaagaggagagaaggaaTCTTCAGAAACGGAgagaagagatagagagagagaggaaagaggaaatggaaagaagaaaaagagaagaaaaagtcagaaaagaaagagaagataGAGAACGAGTGGAAATGAAAAAGCAGTAtgaggaaaaggagaaagaaatgaagaacaaaTATGAAACTGGGGCTAGAAGACAAGCTGAACAGTTTAATGATATAAAAGCTCAACTTGAAAAACGCATAGAAGAACTGATTACAAAGAATCAAAAGGATTATGACCTTCTCAATGAGCTTCACCGCAACGCACAATCAGTGTTACACAGCACAAAATCAGAGCAAGACAGCATGAAATCAGAGCTACACAGCATAAAATCAGAGCTAGACAGCACAAAATCAGAGCTAGACAGCATACAATCAGAGCTAGATAAGCTTAAAGAAAAGGGTCGTTGTGTTATTTTCTGAAAGTATTTACAGGATTTATATCACACATAAACTGAATATTGTTTGTACCCTTTAACAGAGATAAATCTTCCTCTTTACAACCTGTTGTATCTAAGCTTTCGATACAACCTGTTTGATTTCCTCTGTTCTCACTCTGTTATCATAAACGCTAATGTTATTATGTtaaactgatcattttaaaatatggaGAAAGGAATTAACTATAGTCTTTACTGCATGTATGTAACGTTagcaaaaatgtaataaagggCAGTGGTGGGGGTCCGTGTACTTTTTTGCAttcattcaaaatgaaaaaactaattttttaTGGTTTCAAAATGGGATAATTAACATGTTAAAGaataattgttcattttttaaaatattggaaatataaattcaagattatctcttttctctttgttatttattaaattaatttgcagaaatcataaaatacaaaaatgtaaatgtaataaagaaaatattgatTATGTGAATTCTCCAGGTTGGGCCTGTGGGCTGGCTGTTGTGACCTGAAAGTAATTTAGGCCCCTAAAATTATGATGCATAACATTAAACCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472224 lncRNA downstream 65734 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 67270 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 67270 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 67270 305279 ~ 305873 (-) False LOC117596423
TU472206 lncRNA downstream 180010 169832 ~ 193133 (-) True G398140
XR_004577543.1 lncRNA upstream 15279 414465 ~ 417319 (-) True LOC117596419
TU472424 lncRNA upstream 195932 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 243216 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 442750 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 448559 847745 ~ 848753 (-) True G398394
XM_026911527.2 mRNA downstream 22574 341071 ~ 350569 (-) False LOC113525087
XM_026911528.2 mRNA downstream 22574 341071 ~ 350569 (-) True LOC113525087
XM_034301536.1 mRNA downstream 33794 328861 ~ 339349 (-) False LOC113525084
XM_026911532.2 mRNA upstream 18831 418017 ~ 459183 (-) False LOC113525088
XM_026911531.2 mRNA upstream 18831 418017 ~ 459183 (-) False LOC113525088
XM_026911529.2 mRNA upstream 18831 418017 ~ 459183 (-) False LOC113525088
XM_026911530.2 mRNA upstream 18831 418017 ~ 458810 (-) True LOC113525088
XM_034301441.1 mRNA upstream 74564 473750 ~ 481932 (-) True LOC117596396
TU472228 other downstream 47598 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 62488 310583 ~ 310655 (-) True trnar-ccu_18
TU472265 other upstream 75380 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 341057 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 486516 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 500342 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 508439 907625 ~ 907779 (-) True LOC117596481

Expression Profile