RNA id: XM_026911562.2


Basic Information

Item Value
RNA id XM_026911562.2
length 977
RNA type mRNA
GC content 0.50
exon number 5
gene id jpt1b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3206908 ~ 3222780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCGAGCAAAACGGCTGCCCAGATTCCCTATTCATCCCGAGTCGGGCGGAGTCCATGCGGAGGGGAGCTACAGCACATTTTAGACGTTTTAGTGGCTAGATTTAGCTTTAAACGCTTTGAAGAGCAGGTTTATTCACTCCGTTTAATCCTGCCCGAGATGACAACGACGACCACTTTTCAAGGGATGGACCCTAGCGCGAAAAATAGCTccagGGTTCTGCGGCCTCCCGGCGGAAACTCCAACATTTGCTTCGGCACAGATGAGGAAAGGCCGGCGCGCAAGAACAGAATGGCCTCCAACATCTTCGCTGAGCCCGAGGACCCCCATGCCCATCGGAGGAACAACCCAcctgGTGGTGAAGCGAGCGGAGTGCTGTGTGGCGAACACTCCGCCCCACTGAGGCGGTGCCACCAGCCGCCAATCTACCTAAACAACTCTGAACACCCGGGCAAACCCACGGAGGAAAACCACGAGCAAGTAAATCATGatcAGTCAGAGGAAATGGAAGCCCCTGAGGAAGagcctcagcagcagcaacagcagaaggaggaggagcagaaacagCCCTCTGGTGCCTCCTCTGGCCGAAGAAACCCTCCTGGTGGAAAATCCAGCCTCATTCTGGGCTGAGCGCGCTcactgaacactctctctctctctctctctctctctctctctttctttctttttttaaagattcactctctcttcactctctcactctcatcaTGTGAGCCAtgggatgattttttttttctttttgtccacTACCACATGTCTGTATTATTGTTTTTCTAtcgcaaaaaaaagaaaagaaaatgaaagaaaagctgGTTGGCAGAAGCACTTTATGTAAAAGCTCCATTTCAGCCCATCATGAAGAGCGCAGGCCGTGCAGGGGGGAAGCATGGAAGGCAAAGCAAGGAAAAGATTCGTCGCGCTAAATTtctaaatacaaataaagattgATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474000 lncRNA downstream 6157 3182972 ~ 3200751 (-) True G399507
TU473995 lncRNA downstream 10345 3147299 ~ 3196563 (-) False LOC113525117
TU474031 lncRNA downstream 12000 3185836 ~ 3194908 (-) True G399537
TU474026 lncRNA downstream 38305 3167877 ~ 3168603 (-) True G399532
TU473993 lncRNA downstream 50896 3147299 ~ 3156012 (-) False LOC113525117
TU474024 lncRNA upstream 12863 3235643 ~ 3249326 (-) True G399530
TU474035 lncRNA upstream 20777 3243557 ~ 3245044 (-) True G399541
TU474037 lncRNA upstream 50776 3273556 ~ 3274842 (-) True G399543
TU473948 lncRNA upstream 63275 3286055 ~ 3291628 (-) False G399489
TU473957 lncRNA upstream 63802 3286582 ~ 3295273 (-) False G399489
XM_034301638.1 mRNA downstream 10373 3184229 ~ 3196535 (-) True LOC113525117
XM_034301637.1 mRNA downstream 10378 3184229 ~ 3196530 (-) False LOC113525117
XM_034301639.1 mRNA downstream 18821 3178517 ~ 3188087 (-) True LOC117595704
XM_034301635.1 mRNA downstream 69333 3118335 ~ 3137575 (-) False LOC113525116
XM_034301634.1 mRNA downstream 69333 3118335 ~ 3137575 (-) False LOC113525116
XM_026911585.2 mRNA upstream 1285 3224065 ~ 3234324 (-) True LOC113525126
XM_034301458.1 mRNA upstream 27306 3250086 ~ 3293868 (-) True LOC113534415
XM_034301771.1 mRNA upstream 73139 3295919 ~ 3309397 (-) False gga3b
XM_034301770.1 mRNA upstream 73139 3295919 ~ 3309397 (-) True gga3b
XM_034301772.1 mRNA upstream 73139 3295919 ~ 3307173 (-) False gga3b
trnay-gua_7 other downstream 37487 3169334 ~ 3169421 (-) True trnay-gua_7
TU473971 other downstream 242751 2961713 ~ 2964157 (-) True G399490
TU473396 other downstream 780302 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 958677 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 1325850 1825341 ~ 1881058 (-) False G398890
TU474032 other upstream 1320 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 41933 3264713 ~ 3275955 (-) False G399489
TU473969 other upstream 51060 3273840 ~ 3275955 (-) False G399489
trnae-cuc_42 other upstream 88581 3311361 ~ 3311432 (-) True trnae-cuc_42
XR_003403535.2 other upstream 138102 3360882 ~ 3360954 (-) True LOC113534841

Expression Profile