RNA id: XM_034301596.1


Basic Information

Item Value
RNA id XM_034301596.1
length 3124
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113527139
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 833892 ~ 839441 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaagatttcagcaGGTGAGACTGGACAGGTGACAAGGCTGAGTTGTATGATTTCACACATCTGGATTGGGCGCCTTCCGTGAAAATGACCACTGAAAGTAATGAAAGCTGTGTGAAACAATCAGAAGAAAACCTTAAGGGGCACCAAAGGTCAGAAAATCACCATGAAAACAAGAAATTGATGACTGCTGCTGCCAGGGCTGTGAAGGATTTAGGGGATGGTGTGACAGCAGGTTGTTCATTCGGgttggaTGTGAAGAGCATGGAGATAGAAAGTTCTGCACAAACCTGTGATCAGACTGTTTCTCTGCAGAGATTGACCCAAAGCGATAGTAAAGATGCCTCAGTTAGTCGAGTAGCTCGTGTTCTCAGAGAGGCTGAGAAGCCTGAACCTCAGATGTTATCCACAGGAGATGTGAAGCGGCGGACGGCGAGCTCTGGAATACAGTGTCCGTACTGCCGCTACAGATGCGGCGCCAAGTTCTCGTTCCAGATCCACGTTGGCTCGCAGCACCCCCTCCAGTGTGAGGACGTGTGTGTGGGCCGTTTGGGTAAAGTGGTTTTCTACCAGCGCACGGCCAAACTCTTCCACTGCCACATCTGCTTCTTCACATCCAAGGACTACGCTGTGCTGTTCGAGCACCTGCTGGCGAGGCACTGCTTCACCGTTAGGAAAGCGGTGCAGACGGATGAAGACGACGAAGTGACCGATGAAGGTGACACAGAGGTCAGACACAGGGAGGGACACGAGCAGGACAGGAGTCCTAATCCCGAGATAAAACCTGATAATGACGATGCTACAGAACAACGCAAACAAGAAACATCCAACGAGGACGCTCTGAAGAAGAGGAAGCGGAGCTCTGTGTCAAGTGGCGAAGATGATGAGCATGAAGACGTGAACGTGTCCGACAGCATGCAAGCAGCTAACGAGGAGCAAGCGGCTGCTGTCGAGCGGTACTCTGAGAACTCGAGTGCTCCGTATTACGACTGCAAATTCTGCAAACGGCGCTGCAAGAGTAAAATCTCGTTACTGCGCCACGTCAGCCGCAATCACGACGTCCCTAAACCGCACGTTTGTAAAGAATGCAGTGAGACCTTCATGCTGCAAAGTCTCCTGACCCGCCACATCAACCTGCTCCACAGACAGGAACTGTACCAGTGTCCCTACTGTCTGTTTGAGTCCAGTCTCCAAGGCCTCCATCAGCACCTGAGTCACTGCAGAGCCGTGGAGAGCAACCAGGACAAAGCAGACGTGGGAACTGAAGAGAAGGAATGAGTGAATCAGTGGACGAAGATCAAACGGCgtgtcgcttgtagtttgtccTCATGAGCATGTAGAAACACTACTGCTGTCCCACTactgtgggcgtggcctgtccagcattCTTATTTTTAAGTAATGATCAGAAACACTAATAGCTACatatagcttctaaagctaattAGTTAAACcctaaataatgcattaatcagtgtgaaaatcatTTGTGTGATTCACGTGTTACGCGCTTTGCttcattctcagattagattagcaaagcgagctagTTGCTCTAGCTATGTTTACTCATCAGAAGCACTagcgatctctgctacttccttccaagctttatttttctttctaacatctctatacacatttaatgagagcaCGCTTATAagtatttcttccatttttgcgtCAGACAGTAAACGAGAACtgattgcaggtaggaactaaagatgtgagcggggaactgaagaaacatcggaccacacacactgtagtttgggtctgaggaatcattcaaaCCTGTCATTTGGATTCGTCACTTTTTTACAGCATTATAcctttataatataatttattatataatttccGTAGAATTCagaaaatctcagtttaaaTATTGCAGAAATTGTGGCTCTGCCTTGAACATGTATGTGGAAAGTTAATGATTGACTGTTGCTTTGTTGTTCGCTAGCgtgaacctgagagagagagagagagagagagagagagagagagaaagggagaaacagagagagacagagaaagaaagggagaaacagagagagacagaaaaagaaagggagaaacagagagagacagagaaagaaagggagaaacagagacagagagagagagatagaaattGGATCTATCCATCTAATCACAAAATGATGGACTCTGTGTTTTAGATCATTCGTGTAAAGCCGGCTGTACACTTTACAATTTTTGTGtcacagagaaaaagacaaagattGTCATTCTTTGTTCATGAAGTGACATCATGGTGTTAgaacacataaaacacatcatGTGACATGAAACATGGAATATCGCACACCTGGGTTCAAGTCCATAGTTTTTTGGATGTCAGTGATGTTGATTCtccttttaaaatgaatatcaaTCATTgaaaacttaatttttttcttcaggtaGAGACATAGAGTATATAATTAACAGAAAAACTCTGTTTTGGTAAAAACTTGGtttaaagtttataaagttTCTAGAATCCAGCCACCTCACGTACTGTTTTTTACTTGTGGACGGCGGTCACAGTGTTGTATCTGCGATCTGTGAAGTGAGCTGTTACTGTTCATTATATCTGAATGTTCCTGAAGTTCTCCGTTTAGGGCCAGTGGATTATCTCACTGCGCTTTACTGCAGCTTATTTAACCTTACACTCCTCCATGCGCACTTACTCCATCACCTACGTCAGGGGTGTCCAAGCTCTGTGGCTTCTCCAATACCATGCAGTTTTTCCTTTCACCTGACGGTGGCAGCAGCGGTCCTGTAAACCTGCACTGTGTTTCACCTCACTGCACTCAGCTCACAAAGCTCAAAACAGGCCATTTCAGCAGACATTATGAAACAAAGCACTGCAAAGGCATTTCTATAAATATACAGGGGGTGAAAAGGCAGAGAACCAGAAGCAGCTGGATGCTCTCGTGGAGGAAGCTACTCTTTATCAGAGCAAGGAGGCGCAGGAGAATTACTCGAGCTAGTTAGTGACAGTGCTACGTGTGGAAAATGTTTCTCTGAGGGTGAAGAGTATATAGCGTACTTAAATAAAGAGGTCAATGTCATTTGttcccaaaaaaaataaaaggcagAACTTTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472461 lncRNA downstream 189883 642402 ~ 644009 (-) True G398338
TU472424 lncRNA downstream 237903 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 416573 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 526483 307118 ~ 307409 (-) True G398158
XR_004577546.1 lncRNA downstream 528019 305279 ~ 305873 (-) False LOC117596423
TU472520 lncRNA upstream 3362 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 9171 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 11876 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 40451 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 44615 883189 ~ 925071 (-) True G398403
XM_034301444.1 mRNA downstream 68765 756001 ~ 765127 (-) True LOC113527126
XM_026915926.2 mRNA downstream 82572 747910 ~ 751320 (-) True LOC113527787
XM_026939079.2 mRNA downstream 99758 726950 ~ 734134 (-) True LOC113541895
XM_034301706.1 mRNA downstream 141505 677903 ~ 692387 (-) True sox10
XM_034301679.1 mRNA upstream 49361 887935 ~ 890302 (-) False LOC117596444
XM_034301676.1 mRNA upstream 53346 891920 ~ 906375 (-) True fam234b
XM_026910201.2 mRNA upstream 112628 951202 ~ 954200 (-) True fmc1
XM_034301448.1 mRNA upstream 270119 1108693 ~ 1111909 (-) True LOC117596399
XM_026910221.2 mRNA upstream 277060 1115634 ~ 1124106 (-) False LOC113524091
TU472265 other downstream 351884 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 508347 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 523237 310583 ~ 310655 (-) True trnar-ccu_18
TU472486 other upstream 47128 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 60954 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 69051 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 71495 910069 ~ 910223 (-) True LOC117596482
XR_003403678.1 other upstream 75624 914198 ~ 914352 (-) True LOC113536357

Expression Profile