RNA id: XM_026915926.2


Basic Information

Item Value
RNA id XM_026915926.2
length 1998
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113527787
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 747910 ~ 751320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGTTTCTCAAAAGTGAAAGTGCAATCCGTCTCAGAGCGCAGACACACAGCTTCTCTTCTCTTACTCCAGGCCTTGTCTGATTCTAGCAGTTTGTCATGATTTAATCAGAGTGAAGTCAACATGGCGACAGCGCCTCCATTTCCGGTCTCTGTTGCTGGACCTTCCCCCACTGCAGCTGATTCCACCATCAGGATCTTGTTGTTAGGGAGAAGTGGATCTGGGAAAAGCTCCTCAGGAAACACAATCCTGGGAGAAAAAGtgttcatcagtccaaaacGCTATAAAGAGAAAGTTACTAAAACATGTGAAGAGCACACCCGCCATGTTGCAGGaaggaaggtgtgtgtgattgacaCTCCAGACCTGCTGGATCCAGATGTCACAGAAGATGAGCTCAAGCGAGAGAAAGACAAACTggtgtctctctgtcagtctggtCTTCATGCTGTTCTGCTTGTGGTTCCTGTTGGAGAAGAGCTGCAGAATGAGGAGGAGATGCTGGAGTTCATTAAAGAATTATTCAGTCCAGACATCCAGAAGTTTATCATAGTGCTCTTCACACGAGGAGACGATCTGGAGGAGGACGAGACGATCGAGCAGCACATCCAAGAGCAGGGAGAAGAACTGAAGCAGCTGATAGAGAGGTGCTGTGgacatttccatgtttttaaCAACAGAAAGCTTGTAGAAGATCAGGTTACAGAGCTACTGGACAAGATTGAGAACTCAGTGAAGAATAATGGAGGAACATTTGTCATGGGCCAGAGGAGAAGGAACAGCATGGATAGGGAAATACATTTTTCAGAGGACACCAAGGGAGCAGGAACAAGTGAGTCGCAGCAGCATCCTGAGGGAAAAGCGCAGCGAAGGCTGGTACTTTTAGGGAAAACTGGAGTGGGGAAGAGCGCTACAGGAAACACAATCCTGGGCAGAAATGTGTTCGCATCTGAACCAAGTTCATCTTCTCAAACACGAGAGTGCAGcgcagaaaaaacagagaggggTGATAAACACATCATTGTAATCGACACACCAGGACTGTTTGATACCAAACTCAGCCAAGAAGATGTAATCAAGGAAATTGTAAAATGCATGACTTATTCATCTCCAGGCCCTCATGCTTTCCTCATAGTGATCAGAATTGGACGATTTACACCAGAGGAGAAGGAGACTATGAAACAGCTCAAAGAGGTTTTTGGTGCTAATGCAGAACGATTCACAATGATCCTCTTCACCTGCAAGGATgagttagaaaagaaaaaacaaaccattGAGCAGTACTTAAAAGATGGTGACCCAGAGCTGAAAGCCCTTGTGGAGAGCTGTGGAAACAGATTCTACTGTGTGAACAACAATGCAGCCAGCTACACACAGTTTAAAGACTTAATGGGTAAAATAGAGTCATTGGTGGCTCAGAATAAAGGGAACCATTTCACTGAGGAATCATTTGAAGGTCTTGAACAATCACTTGTGGAAATTCAGAATAAGAAGCTGGAGGAGAAACTGAAGCCTTACAGTCAGGAACAAAAGAATCAGACTGAGTGGCAGAAAATTTACTGGAGTTTACTGGAAGAGTCACGATCTGAAGCTCAGGAAATCTTAATTGCTGATATGTATATTGGTGCATTTGCTAAATTGTTTCGAAAAATACAGGTgacatcagaggagagagagagtgcaattAAGGCAGCTGAGAGCAAAGGGGTAAACCGAAGGAAGGCAGTGAGGGCAGCGATCAAAGCCACAGGAAAACTAGCCAGACAGAAGATGTGTGGGGTTCAGTAAAAAGATACATAAACAaagttattaatttaattgaCATATTTTCAGATCAATTTAAttgaaattttatttcacattttcaacagATATTACTTAAAGAATAGTGCAACAATTTTAAGTTACAAACATAATCCTAGGGACTGAGTAAGAGTACCTTGACGGGTTCCAGATTAACCTGCAGGTCaagaatgaataaaagacttcttAATAGTC

Function

GO: NA

KEGG:

id description
ko04621 NOD-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472461 lncRNA downstream 103901 642402 ~ 644009 (-) True G398338
TU472424 lncRNA downstream 151921 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 330591 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 440501 307118 ~ 307409 (-) True G398158
XR_004577546.1 lncRNA downstream 442037 305279 ~ 305873 (-) False LOC117596423
TU472520 lncRNA upstream 90616 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 96425 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 99130 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 127705 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 131869 883189 ~ 925071 (-) True G398403
XM_026939079.2 mRNA downstream 13776 726950 ~ 734134 (-) True LOC113541895
XM_034301706.1 mRNA downstream 55523 677903 ~ 692387 (-) True sox10
XM_034301707.1 mRNA downstream 57615 677903 ~ 690295 (-) False sox10
XM_034301708.1 mRNA downstream 86847 652498 ~ 661063 (-) True LOC117595703
XM_034301443.1 mRNA downstream 101959 644048 ~ 645951 (-) True LOC113547081
XM_034301444.1 mRNA upstream 4681 756001 ~ 765127 (-) True LOC113527126
XM_026914683.2 mRNA upstream 82572 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA upstream 82572 833892 ~ 839441 (-) False LOC113527139
XM_026914681.2 mRNA upstream 82572 833892 ~ 839441 (-) False LOC113527139
XM_034301594.1 mRNA upstream 82572 833892 ~ 839441 (-) True LOC113527139
TU472265 other downstream 265902 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 422365 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 437255 310583 ~ 310655 (-) True trnar-ccu_18
TU472486 other upstream 134382 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 148208 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 156305 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 158749 910069 ~ 910223 (-) True LOC117596482
XR_003403678.1 other upstream 162878 914198 ~ 914352 (-) True LOC113536357

Expression Profile