RNA id: XM_026927232.2


Basic Information

Item Value
RNA id XM_026927232.2
length 5581
RNA type mRNA
GC content 0.44
exon number 15
gene id evplb
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3382114 ~ 3403530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTTGAAGAACAATGGCATTTTGACCCATAAGAGTGAAGTGCTCAAGCTGCAGGATGAAGCAGAAGATCTGGTGAACACAAACCATCCTGGATCCCAGGCTATTAAGAAACATAATGCTGAAGTACAGAAGGAGTGGCAGCGATTCCTCCACCTCTGCAACTGCCAGGAGACACATCTGAGCAATGTGGAGATTTACAAAAAAGTTCCAGCTGGATGCTGAGACGGTCTCCGAGTCTCTGAAGAGAATCAACAGTACCATGGAGCCATCACTGCTGTCCAACATGAGCAACTCACAGATCCTGATGCAGCTTGAGggagAGGAGAGAGCGGTTCAGAGGAATGAGCGCAGACTGGCCGAGCTGAAAGAGCTTTGCACTAAAGTCCCCCCTCTGCCACTGCGCAGGGCCCAGTATGGCAACTTTCCTGTGGTGGCCTTGTGTGACTGGAAAACTGACAAGGGATCAGTGAATCGAGGGGATAAATACACTATGGTGTTCAGCCCGAAGGAAGAATCATGGGAGGTGAAGAACAGCCTTGGAGAGACAAAGGTTATTCCTGGAGTATGCTTCGTCATTCCTCCTCCTGACACAGAGGCAGTTGAACGAGTTGAGAGccTGGAACGGGATTTTGCTGGgctgaagaggaggagagaatcTCTGCTGGCCTCTGTAAAGACCCCAAGTATGGAGGTAGTTAAGGTCGTTCAAAGAGTGAGTGTGTCAAGTGCTCCTGAGGACTCTCGCCCTAGTGCTCTGTCTAACCGTCTGGACCGGCTCATCACTGATCTCCTTCAGCTGGAGAAAGAGGTTCTTGGCAGATTACGAGCTCCATTGTCTCGAGCTGATCACACTGGAGACCTTGTAGCCCGAATCCGAGACCATGAGAGGGCTATCACGACTCTGAGAAAGCTGGAAGCAGAAAAGGCATCAATTCAGAGGGAAATTGAGCCTCTTATATTCAGTAAATCTCTGGGCCCCAACACAGTGTCCTACCCTCCTAAACTCAGCACTGCAACAAACAAGATTGAAGACCTCAACGCCCTCACCGAGCTCTATGGCAAAAAGGCCAATGCTGTTATGTCTTTGGAGAACCAAATTAAGAATATAGGCATGGCTCTGATAGAGCTTGAGGAACAACTGGCCAGGGACACGGTCATCCTCGACAAGCATGGAGCCATTCAGGACCACATTCATATGCTAGAGAACATTGACAATGATGTTGAAGCCAAGAAGGAAGACATCCAGAAACTGAATAAGGACCTTGAGCTTACTGAGCAGCTATGTGGTCATCTGCAGAAGAGTTTCCATGAGTACTGCCCTGACATTCACCGACAGGAAACAGAGGTTAGAAACCTCAGGAACCGTTATGCTAACATCAGCAACCAGCTACAGCAGAGACTGACACTGATGCAGGAGGTGACTAATAAGTACCAAAGTTTTAAGAGCACTGTCCGTTCCCTCAACACTTTCCTGAATGACTTGCCCAGCAACAAAATACTTTCTGAGGACACCATGACTCAAATCACTGCCAAGCAGAACTCGCAGAAGTGGGTCGTTGAGGAACTGAAGAGAAAATCTGATGATATTGACCGAATTTTGTTCCTCTCTCATGAGCTGCAGACCATCCTTaaaGAATATGAGGCCATTACCTATAGGTACCGCAACACTATAGTCAATGATGAGACTGATATGAAAAAATGGCACTCTCTCACTTTTGCTGAAGCTATCCAGAATAAGGAAAGAAGTGTTGTGAAACGATACCATGAATTGTTGGCAGAGAACATCCAACTTCTTGACCAAATGCGACTGGCCAAGAACATCATCAATAAGAATGAAGTAATTGTGAGTCGGGTAACAGTGTACCAGCACAGAGAACTGGAAGAGGTGGAAAACCTAAAGAAGGAGCTGGCAGATGAGATCTCCCGACGTATTcatgctgaaaatgaaatggattCGTTCAGAACTAGGCTGTTGTCACTCAAAAATCGGCGTGGAGTGGAGCGGGTAGAAGAGAAGGAGACTGTGCATTACTACCGTAATCCCAAACTGGAGGCTGACCTagaaataatgaagaaaaagattGATGAAGAGGTCTTGAAACACTCTGTCACTCATACTGAGATTGAAATAGTCAATAAGAAAATCATTGCTGTGGAACATGAAATATCCAACATCAAGCCAAAGCTGGTGACCAAGGTGATGACTGAGTATGCAAGGGATCCTCTGCTGGAAAAGGAGGCAGCATTTATCCGAGAAGAGATGCGAAAGCTAAGAGAGGAAATCAGAATACGGGAAACTGAAATAGTGCAGAGGACCACGGAAATCACTGTCTTGGAGAAAAAGACACCGATAATCAAAGAAAGAGTGATAAAGAAGGAGGTGATAAAAGTGGAGAAAGACCCTGAAATGCTCAAAGCTGTTATTAAGTTCAAGGAGGAAATCTCTGATATAGGCCTCAGATCCAAAAGTTTAAGTGAGGAAATCTTTCACTTAAGAAGCCAGATCAACAAACTGGAAATAATGATTCCCACTATCCAACCTCAGATAGTCACAAAGGAGGTAAAGAAGGTAGAACAAGACCCAGAGCTCATAAAAGAGTCCAAGATTCTTCGTACAAGCCTGGAAGAAATAAGACAAGAAATAAGTATCTTGAAAAAAGAGCTTAGTACCCTACACGTTCGCTATAGCCATGTAGAGACAGTGAAACAAAGGATTGAGGTCAGGGAGATCATCAATGAAGTCTATAGAGTTGACCCTGAAACTGAGGCAGAAATAAGGAGGTTGAGAAAAGAGATTCAGGAATGGGTGACAAAGCGTACTGAAATAGAGAATAAGAGAACCGTGGTGATCGTGGACCTTAATACTTTGCGTTCTCAGAAACCCAGGGTGGAAGTAAAAGAAACTGTACGGGAAATTATAAAAGAAGAGAGAAGTCCAGAAATTATTCATGAGATAACAAGGCTGAATGAACTTCTGACCCGCCTGCGGGCCACTTACCAAGCTACGTTTGACAAGCTGACCATTCtacacaaacagagagatgaGTTGAAGGTAGAGAAGTCCAGGATTCAGATACAAGTTGTTACAAATGAAGTCATCAGATATGAGAAGGATCCTCTTCTGGAGAAAGAGGCCGAACGATTGAGAAAAGAGGTACATGAAGAACATCAGATCTGCCGCATTGCAGAAGAAAACCTCTTTGATCTTCGCCAGAAGTACGTCATGCTGGAGAAACAGAAAGTCGAAGAGAAAATTATATACCAAGAAATTGTACTTCTCAAGAAGGATCCGAACCAGATTATTGAGCATGAACGGTTAAAAAAGAGGCTTGATGAAGAAAGCAAGTCTCGTAGGGAATTAGAGGCTGAAGTGAGGAAATGGAGAGCCATTGTTTTGGAGAAGGAAAAGAGCGTGACTCAGACAGACATTCGGCAAAAGAAAATTCTTGTCGAGACAGAACTTAGGCAAATCAGGTCTCAAATTCTTGAATTTGAGAATGCACCACCCCCTGAGGAGAAGGTCATCATCGAGGAGGTGATACAAGTAGAAAGAGATGCCAAAATGGACAAGATAATTAATGATCTTCGTATTGCGATTGAAGAGGAGAACACCAAGGTTGTTGCCATGGAAAGGGACATTCAAAACCTGAAGCTCAGAATAGATGTCCTTACCAAGGAGAAATCTGTAGAGAGGACGGTCTATAAAGAAGTAATCAGGTTTGAGAAAGACCAAACTGTAGAGGCTGAGAGAGATCGTCTGAGAGCCCAATTAACACAACTCAGGAGTGCAAGACGGAATCAAGAGGAGGAAATCCAACGCATCAACATTAAGGTGACCCGTATTCAAACCTCAGTGACAAATTTCTCCAAAGAGGAGACCACACTTACCACAAATAGGGATGCACTGCTAAAAGAGAGGGATGGGCTTCTTCGGGAGTTGAAGAGATTGGAAACTGAAAGGCAGGACATCACTATAACATTCCAGCATGAGACCAAAGTACTAAGTGAGAGGACTcaaatatacaaacaaaagTTCTTAAGGCTGGAATCTGAGATACAGAGTCTAGAAAAGGACATCTttgctgagaaagaaagaatacaaCAAAGGGAGACCATGATCATCGAACTGCAGGAGACCTTGAAAAAGGAAGATCATTCTGAGACGCACACGAGCGAAACAACAAAATCTACCAAAATCACCATTCTGGATCCAGAAACTGGGAAAGAGATGTCAGCCTACGATGCATATATGCAAGGTCTTATTGACCGGAATCAGTATATCCACCTGCAGACACTTGAATGCAGTTGGGAGGAAGTCACAAGTAGTGGGCCTAATGGTGAGACCATTATTCTACAGGATCGCAAGAGTGGGAAGACATTCTCCATCCAAGAGGCACTGACAGAAGGAAGATTGACCCAATATGATCTTCAGCAGTATAAGGAGGGTAAAATTCCCATCTCAGAGTTTGCTCTAAAAGTTGCAGGAGAAAAGGGTATAAGTTCAGTCACCTTGCCAGTAAAACCCACATCAACCTCAACCTCTGTGATAAACAGCTACAGCTCTTTGACTCGTAAAAGTTCTTTATCCTCAAGCAGTAGCAACTTAAACACCATCACCAATGTAGATGAGACCTTCCCAATCTCTGGTATTTTAGACACCACAACGAAAAGTCGCATGTCTGTGAGAAGTGCCATGACCCGTAAATTGATTGACCCAGACACAGCTCAGAAGCTTCTGGAAGCACAAGCAGCCACAGGAGGGATTGTGGACATCAACAAAAAGGAACGCTACTCAGTCCACAAGGCAGCAGAACGTGGCCTCATTGAATCAGGTCAAATTCAGAAGCTCATCACTGCCCAAAAGGCATTTACAGGTGTTGAGGACCCTGTAACCAAAGAGCGCCTGTCAGCAGGGGAGGCAGCTCAAAAAGGCTGGATCCCAAATGAGAATGCCAGGCGGTACATGGAAGCACAACTTCTCACAGGCGGCCTGGTAAACCCCAACAAAGCTGGTCGAATTAGCTTACAGAATGCCATTAATGCAAATCTGATTGACCAAAAAACAGCTAGAGAGATAGAAGATGATGACAAAATGCTGAAGGATTTGATCAACCCTATTACGAAGTCAAAAATGACATACAAGGAAGCCATGGCACTGTGCAAGAAGGATCCCTCTACTGGGCTCCTCCTGCTCCCAGCAGCATCTACTGATTCAACAGATTCCAGCTCATTCTCCAGCTACAAGGTCTCTTCTACTATAATTTATTAGGGAAATGTAATGCTTACCTTCAGGAAAAAATGTTATGCAGTTTGTGGTATAGGCTATTAGACTATATGCTCAGAAAATAAAGGATCTTTGGGTTACTTAAGTCCCTTATGATTTTTTAGTGAGTGTAATGATGATATGAtacacatttggaaaaaaaaaaataaatatatatatatatgtgtgtgtatgtcaaaGAATGGTGTTTTCCtacatttatctaatatttgGTGTTGTTCTTTTCCAATATTTCTTGTGCATGTATCTTGTTTGACTTCATAATATGGCAGCTTCCAATAAACATTAAGTATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577534.1 lncRNA downstream 18503 3360671 ~ 3363611 (-) True LOC113534314
TU474141 lncRNA downstream 18518 3360674 ~ 3363596 (-) False LOC113534314
TU474142 lncRNA downstream 18518 3360674 ~ 3363596 (-) False LOC113534314
TU473957 lncRNA downstream 86841 3286582 ~ 3295273 (-) False G399489
TU473948 lncRNA downstream 90486 3286055 ~ 3291628 (-) False G399489
TU474150 lncRNA upstream 20275 3414965 ~ 3431282 (-) True G399629
XR_004577577.1 lncRNA upstream 120122 3514812 ~ 3516233 (-) True LOC117596450
TU474294 lncRNA upstream 166458 3561148 ~ 3562361 (-) True G399727
TU474308 lncRNA upstream 190211 3584901 ~ 3585214 (-) True G399738
TU474312 lncRNA upstream 206356 3601046 ~ 3635560 (-) True G399742
XM_034301771.1 mRNA downstream 72717 3295919 ~ 3309397 (-) False gga3b
XM_034301770.1 mRNA downstream 72717 3295919 ~ 3309397 (-) True gga3b
XM_034301772.1 mRNA downstream 74941 3295919 ~ 3307173 (-) False gga3b
XM_034301458.1 mRNA downstream 88246 3250086 ~ 3293868 (-) True LOC113534415
XM_026911585.2 mRNA downstream 147790 3224065 ~ 3234324 (-) True LOC113525126
XM_026926985.2 mRNA upstream 24690 3419380 ~ 3427527 (-) True atg4db
XM_034301543.1 mRNA upstream 39038 3433728 ~ 3464801 (-) False mast1b
XM_034301542.1 mRNA upstream 39038 3433728 ~ 3464801 (-) True mast1b
XM_026927743.2 mRNA upstream 93583 3488273 ~ 3490167 (-) True junbb
XM_034301666.1 mRNA upstream 190584 3585274 ~ 3600490 (-) False ubn2b
XR_003403536.1 other downstream 20288 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 21160 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 70682 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 106159 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 729559 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1566412 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 2192708 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2778298 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2976960 6371650 ~ 6374490 (-) False polr1h

Expression Profile