RNA id: XM_026927370.2


Basic Information

Item Value
RNA id XM_026927370.2
length 3163
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC113534507
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3993225 ~ 3999563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACTTTCCCTGAGCCGCTATAGGGCGAGTGCGGCGTCCAAACGCGCTTTATAACCACTTATACATGCCaccttttataatttttatatatctcAGTGTCTTATCAGCTTAATAAGGTCGCAGAAACAAATATCCAGCGTCGTGTTTTCAATTCGTGTGTCAGGAAATGtagagataataataatcatcatcataataataataataacaacaatcaCTGATTGGAGAAAGTGGGTCTTGTGAGACGTCCAGGCTTTCCGTAAGCCCAGTGTGGTGTAGCAGGTCAGAGCTTTGTGTATGGGACCAATCAAATCTGGACGTTCTCCACTGAAACGAAAGTTGTTTTTAAGCTGCACACTCTTTACCACCTTCTTCAAGGATTTTTACCCCCCTCTGCATCTTTTACAAGAGATGTGGAAACTGTTGTAGGCCTGTTCTGGCCGGAGAGATTCAGGACTTGAGCATTGTGTTCTGGACCCTTTAATTCTCTCTTCAGCCATGCATTTAGAGGTAAAAGTTGCACTGAACTTCATAGTGTCCTATTTGTACAACAAGCTCCCACGGCGAAGAGCAGACCTTTTCGGAGAGGAGCTGGAACGCATCCTGGTGTCACGTTTTGAAGGTCACTGGTACCCGGAGGCTCCATTACGTGGTTCTGCCTTCCGCTGCCTTCATCTCGGAGTCCCTGGGGACCCCGTGGTGGACTTGGCAGCCAGACGGAGTGGGTTGGACATGGAGGAAGTCCGTGCCAATGTCCCTCCAGAGCTCAGCATCTGGATCGACCCTTATGAAGTGTCCTATCAGATTGGTGAGAAAGGGGCTGTGAAAGTTCTCTACATGGAAGATCCGCCAGGTTTGGGGGGTGAAGCTGAAATATCAGAATGCTTAGGAGGGCTTTGTAAAGGAGATATGGAGCTGGAAGATGGGAAGAATTTGGGCTTCAACCCAGACGCTCAGGTCTTTGTGCCCATTGGTGGCCAGGCATCACCAGTCATGCTTCCATCTCTCTCTAATTCACCCACACCTCTCTGTCAAGGTCTGTTCAGCTACGCAGGCTCCAGTACTCCAGCGGATCCCACTGTGCACTCCAACGCCTCCTCTCCGTCTCCACCCAGTACAGGGATGCCCTACCCACACCCAGCTGCCCAACCTAGCTCCCGTCCTGTTCCACAACAAATCACCTTCACCACGGCCAGCTTTGCTGCCACCAAGTTCGGCTCCACCAAGATGAAGAAATGCATGGGATCCGGGGTGGTGGGTGGATCTGGCAGTGTCGGCGTGCCTCAGCAGCGAATGCTGAGCCGTTCACCCACCGCAATGTCCTCCATTTCACCACCAGGACTGGTGAAGCACAAGCCCCTATCTCTCTCCATGCACTCCCTGGCTGGTCCAGTCTCTAGCCAGCTCTCGCCCAATGCCAAAGAGTTTGTCTACCCTGCCTCGCAGGGGCCTCTTTATTTTGAAGCTGAGGCTCCGCACCTGACCCACGCCGGCCCATTCCAGGCACCGCTTTCAGGCCCTGCTCACCCACATGCCACCTTTGATCCATTATCTAGCCCACCACCAGGCCATGCAATGGGTGTCATGGGAGGCAGCGGTGGAATTTCCTTCATGGAGGGTCTGGGGGGCTACAACCTGCAGTACTCCAGCCAAGCTTTCCAACCTGTAGTATTGGCCAACTAAGTGTTCACAATGCTTAAAAGATGTcttctgggaattttttttatgaatttttccACCAGTTGTTACTAATACATAAAGTTAAGATGGTGTTATGACTACTAAAACcacttatgattttttttttccctccatagATCTTTATTTCTATTCAAGGAtaattcttttcctttctcccaAGCCAATGGGAAATAACCAGCCTCCTGCTGCACAGATGTTTTGCATTGAATGCTAATTTGATCTGGGTGTTCCTCACTAAGGTATAGTTCTCTGTACCCTGGCTGAGCAGCATGAGCTTGTTCCAACACTGCTCTTTCATGCTGTGAAAAAAGCTTCATGCTTCAATTTAATCATGTTGAGAGCAAATATTTTGTTGGAAGGTTCTGGAAAGCAGAGAGGTTGGGACTTTGCTATAAGCTGTCTAGTCAAGCCTCACTGTGGGGGGGGGGGGATATTTTTGTGCCAACACAAATCttgcattgttttttctttttctttttcgttCTGTGGTTTATACGAGTACATAGTCAGGACACAATGCACACTATGGGTATCGGGCCTAGTTTTTGAGAAGTCAAATGGGGTAATGCTTTAAAGCTGTGAAACTGTTCAGGAAGATtgtgttttcatatttaaaagcCATAAATATGGTTCAAAGAGGGGGGAAGTAGTCTAGTTAAAGGCGGTGGCAAGATGACTGTTAACATGGTAGTGTTGGTCTCCTGTAGGAAGACAGAGCCAGCAGTGCGTGAAGGTAAGAGGGCAGGACTCGGGTGGATGGGACTCAATATAGCAGATAGGCTCATGATAAATGATGTGGCTTTGGGAAGGATGGAATGATGGGAATGTGTGTATGGGCAGCTATAACCTTTGGCAGTAGCTCAAAACATGGCACTTGGATTGCTGAGCTTGGTGTCCTTCAGAGTTGAAGTTGGGTTTGGATCACACTATGAATGTGAATCTAATTTCTATCTAAGTGGGTGTTGAGCAGTTAGATGTTAGGATTCTTCTTCGTTATTCTTCATCCTCATCAGAGGTTTAGATGTTTTACATATTAGACACAAAGATCCTGTAATGTCTTAAGAGAATGGATGTTTGTTCTTTATGACCTTTTAATAGCTGACATTACCAAGTCCATTGATCCACAATGAAACTCTTGCAATCATGGAGATGGTTGATAATCTGCCTCGACTGAAAGCTTtctcgatagatagatagatagatatctgCTTAAGCTATAACTACCGAACCATCCTTACTATGTTCCTCATATTACTGTGTCAGTCCATTTCATGACCACCATTTTGAGTGGATTAGTTTATTTTTGGTTGTAAGGGTCCAGAGGTTTGCAATTATGGCTGGTTTAAACTGgatgtatttttttacattcatttgtaatttatttacgatttttctatatttttttcctgtgtgttttttcaagAGAGAATCTAAAGGCATTTGTAAAagatattatataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474518 lncRNA downstream 41828 3900779 ~ 3951397 (-) False G399910
TU474524 lncRNA downstream 75110 3916468 ~ 3918115 (-) True G399913
TU474550 lncRNA downstream 81878 3910640 ~ 3911347 (-) True G399935
TU474515 lncRNA downstream 85414 3881393 ~ 3907811 (-) True G399910
TU474514 lncRNA downstream 85414 3894725 ~ 3907811 (-) False G399910
TU474566 lncRNA upstream 9504 4009067 ~ 4066280 (-) True G399950
TU474609 lncRNA upstream 100534 4100097 ~ 4106327 (-) True G399990
TU474649 lncRNA upstream 153475 4153038 ~ 4154893 (-) False LOC113534684
TU474749 lncRNA upstream 191178 4190741 ~ 4276482 (-) True G400085
TU474784 lncRNA upstream 234840 4234403 ~ 4293157 (-) False G400112
XM_034301526.1 mRNA downstream 55587 3927253 ~ 3937638 (-) True rangap1a
XM_026927753.2 mRNA downstream 167721 3822746 ~ 3825504 (-) True LOC113534792
XM_026927404.2 mRNA downstream 183876 3794859 ~ 3809349 (-) False si:ch211-106h11.3
XM_026927403.2 mRNA downstream 183876 3794859 ~ 3809349 (-) True si:ch211-106h11.3
XM_026927512.2 mRNA downstream 239105 3747482 ~ 3754120 (-) True LOC113534607
XM_026927361.2 mRNA upstream 43482 4043045 ~ 4059491 (-) False LOC113534503
XM_026927360.2 mRNA upstream 43482 4043045 ~ 4059478 (-) True LOC113534503
XM_034301488.1 mRNA upstream 107313 4106876 ~ 4117916 (-) False LOC113534511
XM_034301487.1 mRNA upstream 107313 4106876 ~ 4117916 (-) False LOC113534511
XM_026927374.2 mRNA upstream 107313 4106876 ~ 4117915 (-) True LOC113534511
XR_003403536.1 other downstream 631399 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 632271 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 681793 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 717270 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 124686 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 961539 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1587835 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2173425 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2372087 6371650 ~ 6374490 (-) False polr1h

Expression Profile