RNA id: XM_026927374.2


Basic Information

Item Value
RNA id XM_026927374.2
length 1656
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC113534511
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4106876 ~ 4117916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGTCATAAGAGCTTGCAGAATATCTACTCTGATAATCATTTCTAACCACCAACATCCATCTGCGTGAGTGTGCCAGCTGGATTTTTTAGACATTATTTAGCATATTGGAGTCTGGCAGTGAGCAGCCATCACCCTGCAGCTGtgagacacacactaactACGGCTGATGAAGATTAGCAAGGAGTCTGGGAGTGATTCAGACTCGGACTCGGAGCCTTTGAAGCCCAGAACTCGAGGGAGGAAgagcatgatgatgatgagacagAGGTCTGGGAAGAGAAGCAGCAACCTGAACTCATTCTCTCCCCATGCCTCACGTCAGAAGAGATTCAGAAGCAgtCCCACGGTCCGTAAGCAACTGGGAGAGAGCCTCAAAAAGAAACCCAGGCTTGCTGTCACGTGTGGAAATAAAGAAGGCACGCTATACAAAGATAAGTTTAAGAAAAGTGAGCCGTGCATCTGGTCTAATCATAAGTGGTTCACCCCTACTGAATTTGAGAAGTTTGgaggaaaggagaaaaacaaaaagtggaAGATTAGTATCCTGCACAATCAGATTCCGCTGCAAACATTTATACAGGAGGGCTTTCTTCCCTGTCCATCGTTTAAAACGAAGCGCTCACGGGATAAAGAGCCAAAGTGCAGGAGGGAGCTGATTCGGACCAGAAGAAGTACCAGATATGGCAGAAACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTgacgatgatgaagatgatgttcAGGTCACTGAGAGAGAGTTCAGCGGCGACTCTTTTGACGTCACGTGTTCCAAAGGGAGAGAGGTTCTGTCCAAAGggacagACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTGACgacgatgatgaagatgatgttcAGGTCACTGAGGGAGAGTTCAGCGGCGACTCTTTTGACGTCACATGTTCCAAAGGGAGAGGGGTTCTGCATGTAACCCGCTTtgctacagAGACTTGTGGAAAATGCATCAGGACGCAGGACGCCTGGCTCACGCCCGAGGACTTCCTCAACAAGAACAAACCCGGCGGAAACTGGAGACTGGACATCAGAAGCCACAGTGTTCCTCTTGGAAAGCTCATAATGAGGAGGGTGTTGAAGCCTCACATGTTGAACTGCAAGTGTCCCATCTGCACAGGAGAACCTCTGCATCTGCTGGATCAGAACAATGATGACATGTGCTTTATGTGCAACCGCGATGGAGATCTGGTGTGTTGTGACAAATGTCCACGTGCCTTCCATCATCACTGCCACAAACCAGCTTTAAGGGACGACACAATCGGtgatcACTGGACCTGTTCCTTCTGCAAGAAGTCTGTTCCAGGTGCAAGAAAGAAGAGCTCATGACCCGTCCTGAATGTTTAAACACGACTATCATAGTGACTGTTGGAGTGCGGAATGTTTTCCttttacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctcaTTTCACTGactagaaaatatatatttttatcatattttttgcATGATACTTTTTGCTGGTGATGGTTGTGAATTATTTACAAATCAaaagtaataaacatattttttttacagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474609 lncRNA downstream 549 4100097 ~ 4106327 (-) True G399990
TU474566 lncRNA downstream 40596 4009067 ~ 4066280 (-) True G399950
TU474561 lncRNA downstream 68945 3924966 ~ 4037931 (-) True G399945
TU474524 lncRNA downstream 188761 3916468 ~ 3918115 (-) True G399913
TU474550 lncRNA downstream 195529 3910640 ~ 3911347 (-) True G399935
TU474649 lncRNA upstream 35123 4153038 ~ 4154893 (-) False LOC113534684
TU474749 lncRNA upstream 72826 4190741 ~ 4276482 (-) True G400085
TU474784 lncRNA upstream 116488 4234403 ~ 4293157 (-) False G400112
TU474819 lncRNA upstream 162862 4280777 ~ 4281433 (-) True G400131
TU474821 lncRNA upstream 166134 4284049 ~ 4284393 (-) True G400133
XM_026927361.2 mRNA downstream 47385 4043045 ~ 4059491 (-) False LOC113534503
XM_026927360.2 mRNA downstream 47398 4043045 ~ 4059478 (-) True LOC113534503
XM_026927370.2 mRNA downstream 107313 3993225 ~ 3999563 (-) True LOC113534507
XM_034301526.1 mRNA downstream 169238 3927253 ~ 3937638 (-) True rangap1a
XM_026927753.2 mRNA downstream 281372 3822746 ~ 3825504 (-) True LOC113534792
XM_026927646.2 mRNA upstream 2482 4120397 ~ 4132922 (-) False LOC113534693
XM_026927645.2 mRNA upstream 2482 4120397 ~ 4132922 (-) True LOC113534693
XM_026927648.2 mRNA upstream 2482 4120397 ~ 4131422 (-) False LOC113534693
XM_034301699.1 mRNA upstream 16423 4134338 ~ 4144544 (-) True LOC113534634
XM_034301460.1 mRNA upstream 32984 4150899 ~ 4159750 (-) True LOC113534684
XR_003403536.1 other downstream 745050 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 745922 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 795444 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 830921 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 6334 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 843187 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1469483 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2055073 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2253735 6371650 ~ 6374490 (-) False polr1h

Expression Profile