RNA id: XM_026927403.2


Basic Information

Item Value
RNA id XM_026927403.2
length 3867
RNA type mRNA
GC content 0.48
exon number 5
gene id si:ch211-106h11.3
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3794859 ~ 3809349 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCGAATAAAAACCGTTAAAAAAAAACCGTTAAAGGGGCTTAGGAGACGGACAGCGTCTTTACCATAAACTGTGTGGATTGTTCTTCTTTCCTTCTATTTTTATAAAGAGATCATTTACCTGGACGCTATTTTGAGTGTTTCACTTTCTCCACAACACCTTCGTTACAATTAAACAGCAAAACACATCAGCAAAACATCCTCTTCTGGCTGTATTttggtgatgaagatgagggATGTCTTGTGTTTTCTCCTCTTCATGATGGTGGCCCTGGGCTGGCAGGCCCAGGCAGGATGCCCCAGGGTGTGCGAGTGCCCTCCTGAGCGCCCCGTGTGTCCTCCAGGTGTGAGTTTGGTACCTGATGGCTGCGGGTGTTGTAAGGTTTGTGCTGCTCAGCTAAACCAGGACTGCCACGAGGGCCGGCCATGTGACCACCATAAGGGGCTCGAGTGTAATTACGGCAACGATGTGGGCAGCACTCGCGGAATCTGCAGGGCCAAACTGGAAGGCCGCTCGTGTGAGTATAACGGCCGTATGTACCAGAACGGCGAGGACTTCCGCGCCGGCTGTAAGCACCAGTGCACGTGCATCGACGGTGCTGTGGGCTGTGTGCCTCTCTGCCCTACAGAGGTGGTCCTGGCGTCGCCTGCCTGCCCTTCACCGAGGCTGATTAAAGTGCCGGGACAGTGCTGCCCGAGTGTGGACTGCCACCGCGGCTCCTCGGTGCTGCCCCCTGTCTACACAGTCCCACAGCCGCCCCCATACATCCACCCTCACCTCGCGCCCTTCCCTAAACCCTTCCCTAAACCCTTCCCCAAGCACTACCCAAAGAATTACCCACACAGGCCAGAGGACACGCTGAGTAATGAGCTGATGGATGTGGGGAGGAAGTGGGAGAAGCCCCGCAGTCACAAACCCACGACAGCCTGGAAGAAACTGGGAAGCCCTGACAAGTGTGTGGTCCAGACTACGAAGTGGTCGCCGTGTTCTCGGAGCTGCGGTATGGGAGTGTCCTCCCGCGTCACCAACCAGAACGCTCAGTGCAAGCTGGTGAAGGAGACGCGCCTGTGCACCATCAGACCCTGCAGCTCCATGGCCGTGCCTGTAAAGAAGGGGAGGAAATGTTCTCGCACGCAGAAGTCTCCCGAGCCGTTACGTCTCCACTACGCAGGCTGCCGCAGCGCTCGTCTCTACCGGCCCAACTACTGCGGCGTGTGTCGGGACGGCCGCTGCTGCTCCCCGCGCCGCACCCGCACCTCGTCCGTGGTCTTCTCCTGCCCCGACGGCGAGCGCTTCGAGAAGGCCGTCATGTTCATCCAGTCCTGTAAGTGCAGCGACCAGTGCGACCACCTGAACGAAGCCTCGCTCCCGCCGCAGCGCTGGCTCTACGGAGACACGCACAAGTTCATTGACTAGCCGCCTGGCCTCCGTCCAACTCCGCCCCTTCCTTTTCCCCCAGCCAATCCCTGATAGAATAGGCGTACGTCTCGAGAGCAGACGTCGAACTGACGGCCCGGAGTCGCAAACGCTTGTAGACGGAGTGAGAGCTTGGACAAGCGGACGAGAACAGCCAGGAGTATTTAGTATAGTGAACTTGTAGTGTACACTTGTAGTTTATTCCATCACAGATTTGGTTAGAATCACTGAAGGAACCTGGTGGACAAGTAAAGGATATGATCTTATGAAGACATTTTGTATTTGACCCTCGATGAAAAGGGACTGTTGGACTAGTGGACTGAAAGAAGTGTGTCCTTTTAACCCAGGAAAAACTTCACAGTGGGAAATATGCTTCTCAAGATTGTTTTCCATTTGCCCCAGACAAAAAAACTAGGACAGATGGGATCATGGGATAATCCTATAAACTCTATCAACAGCTTTTTTTATACGCAGCTATTATAACGATATGACGGTATTTATTGTGTGTCAGATGATGATGTCAGTTGGTGGGAAGGAGCTCATGCTTCACGTGACAAAGGGAAACACGATGGATTCCTGGACTTAAAACTTGGTTTTAACTTGGACTTGTTTGCCCAGGATAGAAGAATGTGGCCTTACTCCACGTGAACTTGACTTTGACCCTGATTCCCGGTGCCAGAGATTTTTCTTTACTTGAGCCCGAGGAtccaggaaaagaaaaagaaacgtTCGCCAAGTGCCCTCGCATTCTGGCGTCCACACGGCGAGTCGCTGACTCGGTGCAAATTACAATCCTGGGATCAGCAGCCCTCTGGTtttgctgttaaagaaaaaaaagttttaaaaaaacgcCAGCGTATGAAGTAAACATGTAATTTAAAAAGTGACGAGCAGGGACCGCTCCCGATTCGCTCTGTAATCTAGCTTACGATGCCTGAAGCCCAGGCAGACGATGCTCGTGTTCTCGTGTGTCTTTATGACGCCGCGGTCTCCGTTTCTGCCTCCTGGCTCTGATATGCAAGACGCTGGAGGTGACATCACCCTCGTTAGCGAGACCAAAAACCAGCACGCGAAACATCAAGAGCTGGAACCAAGCGACTCACAGTTACACTCCACGTGCACACCAGTCCTGAGCGGCTCGGCTCACACACGACCCAGGATTTCAACTGCAGAAATATATCACCATTGATGGCTTAATGTTCATGGTGTTCACgctaaatgtgtattttttttatatatatgtgcacCTTCGCATTGCTTTGAACCCACATTACATATTATAATAGGAATGGTTTGGCGAAAAATCAAACTTACTCTAAAAGTAGCGGATTAGATGTGGTTGGTGTCCAACAACTAAGATGCTGCTTTTGGCTGTTTTgactgtaaccatagcaacgtTCTTACCAGTCCTAGCTAACTAGTATGGGCTAACTAACCAGCCTAGCTTgctaattagattagatttataatTATCTGTAATGCAGATGGGGTAAAGATTGGTGTGATGAGGTTGCTTGACGTCAATGAGGCAGAAAAGTTGAGAAGTTGAGCTGCTTGTGCAGTTAAAGTTAGAGTGAGACGTCACATCGCATCAGTGAGACGTCACATCACGTTCAGGTGAACGTCCCAAACATACACTTTAAGTTACATTGCAGTGTtggaatatttttaatgaaatgtttttgatgGCTGTAAAACAAAGCTCATTTCTCACTGGCACTGTTTTCtatgttttgggggttttttcttcgcttttttttaaattatcccCAACTTGCATCCTGATTGGTtcaagaggtaaaaaaaaaagcgcttAACGACACTCTGtacttttctgaaaagttaatttttttcagagctCCACCTACGATTGAAGTAAACGTGTGCTGGTGGTGTGAAAGTATGAAAGCAGTGTCAGTGACGACTTGGGACTATAGCactctataaacatgaataaaacttCACCGCGTAGCTGAACACTGGAACGTTAAAGGGGCGCCATCTTGGACAAGCAGAATCCGTCAGGATGCCCTCatcaaaacatttctgaaagcTGGATGCGATGCTCTTCTTTCATCTTAAACGTGTAAATGCAGATGATCTCAGTTTCCACAGAAACGGTCGTATGTATGTAAAGATGTGGGCGTGTGTTTATGGGAAGCGAGTTTTGAGCGAGGCAGACGAACATGGCACGCTAACTACGTTAAAGGTTGCAGAGGAAAACTGTGTACATTTGATTCTTTCGTCAAACTATTCCTTCAAACTATTCCAGCCATAATGtcataatgtgtgttttattttagtaaacgtgatgttttaattttcactgtagatttttttttgggttgttgATTGATGTATAGCTGAGAAAgtgagcagtttttttttttaaatatcagctGTCTGTAAAGTGCTTCTAATGCCCAATGCCAAGACATGTGGTGTATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474391 lncRNA downstream 12428 3782157 ~ 3782431 (-) True G399811
TU474386 lncRNA downstream 19159 3775305 ~ 3775700 (-) True G399806
TU474384 lncRNA downstream 21231 3773333 ~ 3773628 (-) True G399804
TU474360 lncRNA downstream 65474 3728939 ~ 3729385 (-) True G399783
TU474312 lncRNA downstream 159299 3601046 ~ 3635560 (-) True G399742
TU474500 lncRNA upstream 6263 3815612 ~ 3855630 (-) True G399900
TU474509 lncRNA upstream 31254 3840603 ~ 3840914 (-) True G399909
TU474515 lncRNA upstream 72044 3881393 ~ 3907811 (-) True G399910
TU474541 lncRNA upstream 76462 3885811 ~ 3887708 (-) True G399929
TU474514 lncRNA upstream 85376 3894725 ~ 3907811 (-) False G399910
XM_026927512.2 mRNA downstream 40739 3747482 ~ 3754120 (-) True LOC113534607
XM_034301666.1 mRNA downstream 194369 3585274 ~ 3600490 (-) False ubn2b
XM_034301665.1 mRNA downstream 194371 3585274 ~ 3600488 (-) True ubn2b
XM_034301667.1 mRNA downstream 194373 3585274 ~ 3600486 (-) False ubn2b
XM_026927743.2 mRNA downstream 304692 3488273 ~ 3490167 (-) True junbb
XM_026927753.2 mRNA upstream 13397 3822746 ~ 3825504 (-) True LOC113534792
XM_034301526.1 mRNA upstream 117904 3927253 ~ 3937638 (-) True rangap1a
XM_026927370.2 mRNA upstream 183876 3993225 ~ 3999563 (-) True LOC113534507
XM_026927361.2 mRNA upstream 233696 4043045 ~ 4059491 (-) False LOC113534503
XM_026927360.2 mRNA upstream 233696 4043045 ~ 4059478 (-) True LOC113534503
XR_003403536.1 other downstream 433033 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 433905 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 483427 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 518904 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 314900 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1151753 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1778049 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2363639 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2562301 6371650 ~ 6374490 (-) False polr1h

Expression Profile