RNA id: XM_026927485.2


Basic Information

Item Value
RNA id XM_026927485.2
length 1640
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113534587
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4179111 ~ 4187724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTTACACAACTCGTTCAGCAATTCTTCAGTCTACACCCTGTCCGGGAGAACTGGGAACTGCTTTACCGAAAAAGTAAGCAATTGTTTTGTTGTAGAGTAGAAGGATGAACAGCGACCGAATACTCGTTCTGCTGGATATGATACCGCAGGAGGAGCTGGTGAAATTCTTCCGCTCGAACAAGACGCAGATCTCTTGCATGGATGAACCGCACACCTTCCTCAACCAGCTACGTGACAACGGTCTGGTACTTGAGGATCTCTACCAGaaggtaataaaaatgagaaataaggAGAGAAGGCAGAGTGGTGTGTATCAGATTTTGGAATGGCTGGAGAAGCAGGGAGGGCAGTGTGTTAAGAACTTTTGGAGATCTGTGTTTCAGGATCACATCCTGAAGAAATATTCTGCTTTGCGCTCGCTCCAAACCAGCTTTCTGGATGGATCTTTCAGGGTTATTGAAAACCTGTCTGATGCAGAGAAACTGACAGGAAGTGCGGAAAAGGAAACAGAGCAAAAGAAGGGAggaacaaagagaaagaaatgcaatgatgagacagaggaggaggatACAGGCCCTTCTTCTATGCCCGGCCCCAGCCAGAAGAGACCTGCCATGGAGCCTACATTCTtggAGTCCACTGGTTCCCAACTCCAGGAGTCCAGGAGTACCCAATGTTCTAAGGACCCACTGGATCAGATTAAAGATGATGCGTGCTTCATTTGTAATGAAGAGGGAAATCTGGTGCACTGTACACAATGTCCACGAGCTTTTCACTATCGCTGCCACTTACCAATTCTACAGGAGGAAACACTTGGggacAGTTGGTTGTGCACTTTCTGTGTGTTAAAGACTGACCAGCAATTGCAGATTCAAACGAGAAGGGAAGATATTTTAAACAGTCCTGTTTCTGGAAAAATCAggcactgtgagtATTTGCTGTTGTGTATGTACAAGGGGGACGAACTGCATGTGTTTACTGGCAACCCTACCATAACAGATACAGAATGGAGCAGTGTGATTTCAGAGCCCATGTGGCTGGACAAAGTGAAGACCAAGCTGCAGGATAATAAGTATAGAACAGTCGGAGAGTTCGTGCGTGACATCAATCTCATCTTCAAAAACTGCCAAACTTTGAACAGTgatAATGAATTTGGTAAAATGGGAGCCAAACTGAACAAGATCTTTGAGAGGGAGTTCCAGACCATCTTTAAGATTCAGTAGCATTTGTCCTCTTTCACAAACCTGCGTCTTATTGGAAAGTGTATAATTAATATCCAAagtttaatattacattttgcaTAGACTACAGAATCAGAATGATGCTTTATTGGTCAAGTATACTAGAGTATACAAAGAATTTGACTCATGTTGTTAATTTATAAAGCAATACATAGATCTTACATGTCTGTTATGTGACTACTTCTATAAATCTCAGATACTGTAACAAAtccaggataaaaaaaaaatgtgtatattatattaatctgtttttttttaattttttatatgcaGCATGTGTAATGATTTTACATAATACTAAGGCTATAAAAGAGCTAACATCTTGCAACTTCATTATTTTAGTGTAATACTAAAAGAAATGGAAGActtcatttacagtataatattatatttaata

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474649 lncRNA downstream 24218 4153038 ~ 4154893 (-) False LOC113534684
TU474609 lncRNA downstream 72784 4100097 ~ 4106327 (-) True G399990
TU474566 lncRNA downstream 112831 4009067 ~ 4066280 (-) True G399950
TU474561 lncRNA downstream 141180 3924966 ~ 4037931 (-) True G399945
TU474524 lncRNA downstream 260996 3916468 ~ 3918115 (-) True G399913
TU474749 lncRNA upstream 3017 4190741 ~ 4276482 (-) True G400085
TU474784 lncRNA upstream 46679 4234403 ~ 4293157 (-) False G400112
TU474819 lncRNA upstream 93053 4280777 ~ 4281433 (-) True G400131
TU474821 lncRNA upstream 96325 4284049 ~ 4284393 (-) True G400133
TU474783 lncRNA upstream 102871 4290595 ~ 4293157 (-) True G400112
XM_034301461.1 mRNA downstream 3957 4170470 ~ 4175154 (-) True LOC117596407
XM_034301411.1 mRNA downstream 10551 4166324 ~ 4168560 (-) True LOC117596393
XM_034301460.1 mRNA downstream 19361 4150899 ~ 4159750 (-) True LOC113534684
XM_034301699.1 mRNA downstream 34567 4134338 ~ 4144544 (-) True LOC113534634
XM_026927645.2 mRNA downstream 46189 4120397 ~ 4132922 (-) True LOC113534693
XM_026942401.2 mRNA upstream 108122 4295846 ~ 4338427 (-) False maptb
XM_026942404.2 mRNA upstream 108122 4295846 ~ 4337644 (-) False maptb
XM_026942407.2 mRNA upstream 108122 4295846 ~ 4337632 (-) False maptb
XM_026942409.2 mRNA upstream 108122 4295846 ~ 4337632 (-) False maptb
XM_026942408.2 mRNA upstream 108122 4295846 ~ 4337632 (-) False maptb
XR_003403516.2 other downstream 46189 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 817285 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 818157 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 867679 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 903156 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 773378 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1399674 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1985264 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2183926 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 2248263 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile