RNA id: XM_026927645.2



Basic Information


Item Value
RNA id XM_026927645.2
length 4417
RNA type mRNA
GC content 0.41
exon number 16
gene id LOC113534693
representative True

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4120397 ~ 4132922 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TTCTGGCGTGAGGACATGGTGGGAGACGCAGGCGGGAGATTTGTGGGGATTTAAGATCTACTTTTGCATAACAAATCTTCATTCAGCGCCGAGATACTCAGAACTCTTCCGGATATCAAAgGAATGGGAGTCCCAGCCACCCAATGGATCCACTGGATTTTCTAACTCAAGAGGAGTTGATCAAGTTTTTTCACTGCAAGAAGACAGAGATCTCTTGCATTGAGGAACCGCACACCTTCCTCCACCAGCTCCGAGACTACAACCTGGTCCCTGAGAAGCTCTACCAGAAGGTAATAAAGATGAGAAGTAAGGAGAGAAGGCAGGAAGGTGTGTATAAGATTTTGGACTGGCTGGAGAAGGAGCGAGGacagtgtgtgaaggtgttttggagttgtgtgtttcaggatcACATCCTGCTGAAATATCCCATTCTCCGCTTGCTCCGAAACAGCCTTTTCGATGGCTCCTTCAAGGTATATGAGAGCCTCCCTGATATGGAGGAACCAAACAATAACGAGAACGAGCCAGtgcagaaagaggaaaagaaagtgaagggaaagaaaagagatggaaagagaaagaaaagtgttgaagagacagaggaggaggaggaggaggaaccAGGACCTTCCTCTTACTCCACACCTACCCGGAAGAAACCAGCCAGAAGGCCCACATTCGgCTCTCCGTTAAAAAGAGGAGAGAAGCCTGATATTTGGATGTGGGATTTTTATAAAACATCTCTCCCTGTTACCTGTGGTGATAAAAAAGGCTCACTGCATCGGGGCAAGCTAGCCAAAGGGATCAAGTGTATTCTGCATGAGGGGCACTGGTTCTCTCCGGGTGGCTTTGAGAAGTTTGCGGGAAAGGGGAACTGCAAAAACTGGAAGCTCTCCATCCGCTGCCAGAAAACTCCACTACAAAAACTTATACAGGAGGGCCATCTGCAGTGCCCACGCATGAAGAGACAATGTGTTCGGAAGAGTCGGAGAGTGCTGTTTCCTGGCAGCTCCTCTGAAAGCTCCAGCCCTCAATCCAGTGTCGAGATGGAGGGATCAAGTGAAGACCAAGAGGAGGAAAGTGAAGAGGATGGAGAAGAAGATGACAATGAgaacgaagaagaagaagaagaagagagcgAGCCAGTGGATCTGTCAGAGTTTGAGGCTGCAGTTTTACTTGTCAACTGTGGTTCTGTCACTGggaatttatataaaaatagatttgCAGGGTCACACAGTAAGAGCATCCGCACAGAGGAGCGCTGGTTCACTCCTGAGGAGTTCGTAAAGCAGGAGTTAACCCTGACAGACGGACACTGGAGGAAAGATATACTGTGTCACGGCAAAACCCTTAACTACCTGGTGAAGAAGAAGATCCTGTATATCCATTCGCTGCTGTGTGATTGTGATCGGTGCTGTCCTGATGACCCGCTGGCTCAGAATAACGATGATGTTTGCTTCATTTGTGACTCTGATGGAAAGCTGGAGTGCTGTGACGAGTGTCCACGAGCTTTCCATCAGGACTGCCATTTACCAACTCCACCCAAAGAGACACACGGggaTAAATGGATGTGCACTTTCTGTGTCTGGAAGCTTAACCAGCAATTATGGATTCACAAGAGTCTGGAAGATGCTTTGAACAGTCCTGTAGACCAAAACATCATgCGCTGTGAgtatttgctgttgtgtttgtatAAGGAGGACACACAACAGGTGTTTACTGACGATCCCTACACAACAGTGCCgggatacagcagtgtgattTCTAATCCCATGtggctgaacagagtgaagaGCAAACTGCAGAGAAACCTGTACAGCACAGTGGGAGAGTTTGTAGACGACATCAGGCTCATCTTTCAAAACTGCCAAACTTTTAACAGGgatAATGACTTTGTCATGACGGGAGCCAGACTGAGCGAGATCTTCAAGCAGAAGTTCCGCATCGTCTTTAAGATCCAGTAGAGATTTTCCTGTTTCACAAACCTGCATGTGATCGTTCATTTTACAATTGAAAGACAAAGATTGTTGTTTGCTTAAAACTTTATAATCATCGGGGagttttttatgattaaatattgTCAGGGGAATTGATTTAAGTGAGCGGATGAGTCAAAGTGTGAGAATGGTCACATTAGAGGTTTTACCACAGGAATCTATGAGTAACTGTTGAACAGGCGAGTGTTACTGTGTCACAAAATATAACAGCTAATCAGATTCCAGTATGCAGATTTGGGAAGGGGGCAGGCATTTAGCGTAGGGGGACATCTCAAATTTGCTATTTTTATCTCACTATAAAAATTTATAGTGCCTGGATTTTCAGAAGGACTTTAATGCTACTCAGTGAACAATAgaaatattgtgtaaataaGCGCTAATTATTTCCTCAGTGTTACAAGAaaagtgtttctttttccatttattaatatattcattaatgAGAGGTAACATTATAGCACAGTTACTGCATAAATCAGCATTATTTGATGCATGTATAATcatttgactatatttttttatgttaaaccCCCACCTCTGGGTAGGACAACTGTCTCCTGGAGTGTTTCAGGATTTTCGGACATTATGATATCGTCGTAATTGTCGTTAAAagacaattattttaatatcgGCTATTTTGCACATAATTTAACAAATTTCGCTGAAGAAATGTTAAGCACGCCATTTAAGCACAAATAGATCAGCTTTGGTGAAGTGCAGTGCTTTTTAATGAATTAGCACCATTTTAGATACTTAACAGTTTACTTCTACCCAATGAGAAGGCAGTGTATTACTGAAGTTTAATGTATTATGTGAgtttttgattgtttatttgtgttaaaatgtaaagttaacCTAGAAGATGCACTTTTCttgtaaagaatttttttaaaaataagaaaaatttgCTTCGGTTAAaatcgctttaaaaaaaaaaagacattatattatattcctaTTTACATAAAACTAATGATGTTTGTGTCATCTTGAGCTGAAAATaaccctacgttcacactagcagcTGTTGATTGGAGTTTGTCTCTTGTTGGCGTGTAGCGACCGTTAGTGTTGTCGCTTCTGGGCatgcacttttttgtttttttttcagcagtagCCAAAATGTATAGCCTACAGCCTATTATACGATTTATACACaccacttttgtttaaaatgtatttaagtttGATTTGCATGTCATGTGCTTGGATTTGTACTAGCTTCTTTGGCAGATTAGCAGAGCAAGccaactgtactagctacatacactcaccagaggcaccatgATCTCCGATCCTTCCTTCCAAACTTTACTcttctttgtaatgtctctatacacatttaatctGGTCATacatgacaggataagatgaaacctcAGTTATAagcatttcttccatttttatgcatcaaacagtaaatgggatctaactgcaggtaggaactaaagttatGAGTGAGGAAATGATGAAATGTCAGACCACACACGCCATAAGATTGGTCTTAGGAATCTTTCAAGccagttgtttggatttttatGCTTTACTGCCTCATACCTCATTTGCATAGAATCTCAATTCAAAGTCATTTGTCGCTGTCACTGAAATCACGGCTCTGTGTCAAACCTGTATTTCGAAAATGAATGGTCACTTGCTAGTGCGAACGCATCGTAACAAGGTGAAATGAAAGTGTTAGAAACGTCTGAACCAAAGAGGTGATGTCATACAGACATCAACATGATCACCAAGAATGGAAAGTGCTTTTGAGAGTCTGTTTGCATCAGAATTTTGTCATTAAGATCATTTGTCATTAAAGCCAGCCTGATCAGTTGGGCAGAACAGTACCGTTAACCTGTCTGTGTGTCCAGACTAAATATTCTACAATCTACATTCAGCTACAttggttttttttctattagtttGACAGTAGTTACTGAATGACTCATGGTAGGCACTGAATAATATACTTCAGACTTTAAGAACACAGATGTTATGTTTCATCTGAATGCCTTAGGCCAGTGATGCTGCAGCATGTTGATTCCAGTTTAGTAGAAGCCACAGCTAACAGAGTTGATGGATGAGTCATTTGGTAAACGTGTATCTCCTGTTTGACTGGAACTCCATTTGTTGCCCCTcccttgtttttgtcttttgttcttGCTCTGTCATCTCACTAATTGCATTTGAGGTTAGCAAAAGATGGTTCTGAAGAGTttctttaaaaagtgtttttatgtctttttagtGTCTTTAAAAAGTCTCATTTCATGTTCCtctatataaaatgtatataatcagTGTTGCATTAACTGTACCAATGGCTGTTCATTGAATGcagaatgttaattaaaacTGCCCTGTTGATTTTACTGTTATGCATGGTCTCAGATCagctgaataaaatgaaatgtttcgaA

Function


GO: NA

KEGG:

id description
K24504 SP140; nuclear body protein Sp140

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU474609 lncRNA downstream 14070 4100097 ~ 4106327 (-) True G399990
TU474566 lncRNA downstream 54117 4009067 ~ 4066280 (-) True G399950
TU474561 lncRNA downstream 82466 3924966 ~ 4037931 (-) True G399945
TU474524 lncRNA downstream 202282 3916468 ~ 3918115 (-) True G399913
TU474550 lncRNA downstream 209050 3910640 ~ 3911347 (-) True G399935
TU474649 lncRNA upstream 20116 4153038 ~ 4154893 (-) False LOC113534684
TU474749 lncRNA upstream 57819 4190741 ~ 4276482 (-) True G400085
TU474784 lncRNA upstream 101481 4234403 ~ 4293157 (-) False G400112
TU474819 lncRNA upstream 147855 4280777 ~ 4281433 (-) True G400131
TU474821 lncRNA upstream 151127 4284049 ~ 4284393 (-) True G400133
XM_034301488.1 mRNA downstream 2481 4106876 ~ 4117916 (-) False LOC113534511
XM_034301487.1 mRNA downstream 2481 4106876 ~ 4117916 (-) False LOC113534511
XM_026927374.2 mRNA downstream 2482 4106876 ~ 4117915 (-) True LOC113534511
XM_026927377.2 mRNA downstream 5330 4106876 ~ 4115067 (-) False LOC113534511
XM_026927375.2 mRNA downstream 5551 4106876 ~ 4114846 (-) False LOC113534511
XM_034301699.1 mRNA upstream 1416 4134338 ~ 4144544 (-) True LOC113534634
XM_034301460.1 mRNA upstream 17977 4150899 ~ 4159750 (-) True LOC113534684
XM_034301411.1 mRNA upstream 33402 4166324 ~ 4168560 (-) True LOC117596393
XM_034301461.1 mRNA upstream 37548 4170470 ~ 4175154 (-) True LOC117596407
XM_026927485.2 mRNA upstream 46189 4179111 ~ 4187724 (-) True LOC113534587
XR_003403536.1 other downstream 758571 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 759443 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 808965 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 844442 3264713 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 828180 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1454476 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2040066 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2238728 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 2303065 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile


XM_026927645.2 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

XM_026927645.2 Expression in each Bioproject

Bar chart with 3 bars.
XM_026927645.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.