RNA id: XM_026927753.2


Basic Information

Item Value
RNA id XM_026927753.2
length 1418
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC113534792
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3822746 ~ 3825504 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagatggaaagagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatgaacagaaagtgagtgtatatttatgaGAGCAgcagaaaagtgtgtttttgaGAGACAGGTAAAGAGGGTGCACAAGTGGTGGAACAGAGACACGACCCAGGACGGCTCCATGGTAACGACAGACCACAGCATCCGCTGACTTTCGGGgggaaataaaagagaaaatcaTCCAGGACTGTTAgAACTTGGATGTCTTCTAGTCCACTGTCATGTCCGTACCATGTCTCAGCCCACGCCAGACCTCCCGCTCGTCTCCGACACCGCTTGCTGGAGCACCAACACCAAAATGGAGACAGAAATCAGCGCCAGACTTTACAGGAGCACTCGTGGGTCAGAAGGAGGGAAATGTGTGCCGTGTCCTCTCCGCCCTGCCCCTCTGTTCCGCTCCATCGGGCTGACGGGGTTATCTGCCAGCCTGCCACCTCACCGCCGCTTACGCTCCATCTTACACAGAGCGCGAGCGGTGCGGCCTGATAATGCTAATGAGACCAATAAGGCTCAAGGTGGCTCGAATGCTAACACACTCATTTCTGATGCTACTGACCGAGGATTGCCTTTCAAAGACTTTCTGCCTGAGATCATGACACAGAAACTCCGTCCATCTCAGACCCATCAAGAGACGCGAACAAGAGGAAGCCGCTCAATCAGAGACACGAAGACCTTCTCCAGCTTCCAGTCTCAAGCAGAGTCGTGTTTAAACCCCAACAACAATCTCACAGATACATTTCAGAGCTGCCACAGCATGGGACACCAAGATCCTTCATCAAAGACTTACACTAGCAGGAGGACCATCGTGTTTCCTCTCACACAGAGCGACACACACTCAGCAGCAACCACTGAAACACCAGTGAGTGCCAACAGAAAGAGGTGGAGCAGGAAGATCAGACAGATTTTGACCTCTGAGAAAGGCAGTGATGAGCAGGATATCAGTGAGTGTTTTCACAACCTGGTCATAACAGATGATCATCCCTCTTCCAACAGGAAGAACCTGAAAGCTTCTGGTTCTCCAAAGTCTAACAGAAACGAACTAGACAGTGAGCATGAAGGAAAAGGGGCGTGTCACACCCGGAGAGACCGACGCCCACATTTCCTGCCTCCAATATCTCAGTCAGGATGCCTGTTAGACGTTCCATTCGTCCTTCCAGAGAATTCCCCTCCTCCATCTCCCAGCAGTGTTTTCAGCACTCCTTTCTTCCCCCTTAGTGTCCCGGTACTTCCTGTCCGTCCCCAGCGTGGAAAGAGAGACACCTAAGACACCTGAGACACCTGAGACACCTGAGACATCCAATGCAAATCCAATCGACTCTCAgtattaaacacattattttacaatttttacatttacattttcgaTATATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474391 lncRNA downstream 40315 3782157 ~ 3782431 (-) True G399811
TU474386 lncRNA downstream 47046 3775305 ~ 3775700 (-) True G399806
TU474384 lncRNA downstream 49118 3773333 ~ 3773628 (-) True G399804
TU474360 lncRNA downstream 93361 3728939 ~ 3729385 (-) True G399783
TU474312 lncRNA downstream 187186 3601046 ~ 3635560 (-) True G399742
TU474509 lncRNA upstream 15099 3840603 ~ 3840914 (-) True G399909
TU474515 lncRNA upstream 55889 3881393 ~ 3907811 (-) True G399910
TU474541 lncRNA upstream 60307 3885811 ~ 3887708 (-) True G399929
TU474514 lncRNA upstream 69221 3894725 ~ 3907811 (-) False G399910
TU474518 lncRNA upstream 75275 3900779 ~ 3951397 (-) False G399910
XM_026927404.2 mRNA downstream 13397 3794859 ~ 3809349 (-) False si:ch211-106h11.3
XM_026927403.2 mRNA downstream 13397 3794859 ~ 3809349 (-) True si:ch211-106h11.3
XM_026927512.2 mRNA downstream 68626 3747482 ~ 3754120 (-) True LOC113534607
XM_034301666.1 mRNA downstream 222256 3585274 ~ 3600490 (-) False ubn2b
XM_034301665.1 mRNA downstream 222258 3585274 ~ 3600488 (-) True ubn2b
XM_034301526.1 mRNA upstream 101749 3927253 ~ 3937638 (-) True rangap1a
XM_026927370.2 mRNA upstream 167721 3993225 ~ 3999563 (-) True LOC113534507
XM_026927361.2 mRNA upstream 217541 4043045 ~ 4059491 (-) False LOC113534503
XM_026927360.2 mRNA upstream 217541 4043045 ~ 4059478 (-) True LOC113534503
XM_034301488.1 mRNA upstream 281372 4106876 ~ 4117916 (-) False LOC113534511
XR_003403536.1 other downstream 460920 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 461792 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 511314 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 546791 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 298745 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1135598 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1761894 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2347484 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2546146 6371650 ~ 6374490 (-) False polr1h

Expression Profile