RNA id: XM_026927829.2


Basic Information

Item Value
RNA id XM_026927829.2
length 7012
RNA type mRNA
GC content 0.40
exon number 6
gene id shisa7b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12329158 ~ 12348572 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaaccATCATTGCACGACCAAGGTCCTTTGCACACCCCCCCTCTCCTGTTTTTTTGCGCACAGTAGCGCGCTGTGCTCTGGATGCTGTGCGACGATGCTGCGCGCTGCGAATGAACCATTTCagcttggatgtttttatgGCTGCATATCTCCAACAGGAGGCTGGAACAGAGATGCAGAACCGAGGATAAGCCGTGATCTGGGACCGTGAGCacactgggttttttttttccttccctgcTTCCTGTTCTTTCACGTCCACGGTGGCTTTGCTTCTGTTCTTCTCTGCATCTGTGCATCTGCTCTTCTCTGCATCTGTGCATCTGCTCTTCTCTGCATCTGTGCATCTGCTCTTGCTCTGAAGGTACTGCGTTATTCTGGCACGGAGCTCGCGCGTTATTTACAAGCAACACGTCCGAATCCAGAACGACGCTCCAGCTGATTCCagctgtttttggttttgttttttaagaaagGAAGCTATGATGTGGAAACTTGGGAAAAACAGATCTTAGGAAACtatagaggaataaaaaaaaaaagctccataCAGTGAAAATTCAAGATTAACAAAGGCATGCACAAGCCAAGACGAATTAACTGAAAGAGACGTCAGTGTGGATGAGGATGACTGGACCACCAGCCAGGAGGaaaagtctttattttttaagaagGCTGCAGCAgcatatgtttttttctctttttatgaGCCAGGGTTTTTTGCAAAAAATGTTGAATTGCACACGTTGAAGTATTTGTCTTCTTGTTCTTCATCTGTTTTTGAAGTGCAGCCAAAACTAGTGCCAAACACTAACTGTGCCAAGTcggggggggaaaaaagaaaccaaaccatttcagctgcatttttcaaatatttctcAATCCATTTTTTTACCCTTTTACCTTACATTCAACATGAACTTACAcatgaagtgctttattcaGGAGTGACTGTTAGCTGTGCAATTAAATTCACTCTCACTGCTAGGAGCTGGCCCTTGATTGAGTGACCAAAAATAGGGCCAACAGAAGCCTCCTTAAACTCCACAAAGTGACCTGCTGCTAATTTTGTCCTTGCGAGGCCTGGCATGTTTCTGCTTCATCAATCAACCTCCGAGCCATTCTATGCTTCTGCAGTTACTCCTCTTCTTCCCTGATTTCTGTGCACtagaaaaaaagagttttgtcttcgaaaaaaaaaatcctcaagcCATAGTTTGTATAGCCATCCCTGTCATGACAGTTAATACTGGGTTATGAAACTacaatatttatgaatttgATTTTTAAGAACAGGTTCAAAGGTATATTCAGGGATACTCTTGAAGCCAGTGACAAGAGTGCATTCTGCCATATTCACCAGCATATAATGAGCCATTAGTATGTTTACATAAATTTTCCATTGGTTTTCACTAGTTGGGAACCGCACATTAGAAGTGAAAATACTATTCAGTACTGTAATTTGGATGAGAAAATCACTAGTTTTAATTTGTTGCCCTGAATGTGTTCCATATGGATGAATGACTCCCCAAAACTCCCCAtatacaaacagacacacatattTCCTGACTTGTTTTCAAGTCAAACAGATTAACACATGCTGCTTGGTAGCTTCTACCCTGACTGATTAGACTCTTCTGCAGTCTCTGGGATGAGCTATCATCTTGTATaactattagaaaaaaaaaaagatgagcaCTTCCTCAATGTTTCATTTGCAATCAccttttctgatttattttaatagtcTTACTGTATAGTCTCAATAACTTCCATAACACAGAAGGCAGAAGAAGATATttatgcatgcaaaaaaaaatcgtGTTTCAGATTCCAAGCTATTTAGAGGCTTGAAAGGTCTTCGTGtgtttactattttattatcattGCCACAGCCAAAATCTCCACCCTCTGAtctctttctgtcattttaCACACTGGCCGCAAGTTTACAATTCACAAAGAAGAGGTAAATTACACtagtaaaggttttttttttaatgaagttgATACGTCAGTTTTTAAGAGGTGTTCATGTTAAATATCTGTCTGGCAAAGTGCCAACTACAAACAAGgacatttataatgcatttaataataataaactagtTATAGTTATAATAGGAATAACCTTACAGTAGACTTCAATTTACAAGTTTACACTGAAAgagaaatgtttacatgttcCCCTTAAGGTGGACTAATTTTATGTCCAAACAGTTTGTTGGAATGTgatagtttatttaaataaaacataaaaaatacccacatttaaaaagtaaagaagCCTGTTAGTTTGATGTGCGTTAGTGATgagtataatatttatattgttaacATGTTCCCTGAAATCCATGTCATGAATTTGTCTTCAACAAAGCATTCATACACCTAAATTCATTTTTCCAGATCATACCAAGTTTTACATTCAATCAACCGAAATCAGTTTTGTTGaactaaaatgaaattaaatctgTACAAATCATTTCAACACTTTTTTCCATGTATAACTGGATTAACTCTGTTCCTTTTCTGATGTTGATATTTCTGTAGTGTTTTGTCGGCATAAAGACATCACTGAATATAATTCCATATATTCTTCAATATATTCTTCATTAAGCTGAAAATTGTTTCATTGGTTAGACATGCATTTTGCATAGCATTTGAGAAAACGCTAACTAATTAAAGTAACACTAACTTCTTGTATATGTTACATATTGTCAGAGTGGCACACAATTTTCTTTCTTAATACACCAGCATTTTGTATTGTTAAGAACCATTTTGTACAAAGTGGTAAATTGTTCTAGTTCTTTGAGTGGCCCTTGTCATCAAAATGCCGTTTGCtgccattttgtgtttttttcttcttttggacCATGTGATTTCCACAGTGGCTGTTAGTTCAGAACGTCACTCAGCCAATGGCAGGCCACTGTTGCTTTTATTGCGAGGCTGGGGCAAACAGATCCCACCCCCTTCACTGAAGGGGAAGGGAAAAGAAGCAGCGGCCATTGCAGTGGAACCAGAAGTGGCTGAGATCCCTGCAATGCCTCTTCCTCAGATCATGCTCCCTCGTAACATGACAGCCGATGCCCTGAAACCCCCACTGGGGGCTGCGCAGGTGGCGCCACCACCACGGCGTCTGGTGGATGTCGATGTGTGTAGGGGCTACTATGATGTAATGGGACAGTTTGACCACACCTTTAACTGCACAAAGGGCACTTACATCTATTGCTGTGGCACTTGCCACTACCGCTTCTGCTGTGAGCATCAGCGCAACCGGCTGAACCAGGACGTATGCACCAATTACATCTCACCCATCTGGGCCAACACACAGGTGCCTGCCACTCAGCCCCCAAGCCGTTCGGATCCAGACTTTGACCCTTTGCAGCAGCAGAGCAACAATACATTTTATGTCATCGGTGGCGTCATCTCTTTCACATTGGCCGTGGCCATTGGGGTGAAGGTGGCTTGCCGCAAGGTCTCCCGTAGACCCAGGAACCGAGATCTCAATATGCCCAGaGCACTGGTTGATATATTGCGTCATCAGTCCAGCCCGGTACagcagagtgagagaaacaaCAGCACCACTGCCACCACCAGCAAAGGCACTCTGGGACGGCAGTCCAAAAACCATTACACACCCATCCTCCAGAGCAAAGACAACCGGATTGGGAAACACAATTTAATCCAGTCTGGGCCCAGCCCCAAACACACAGCTACTATAGAGCGTGTACCACGGATGAACAATGCCCAGCTCACCTCCACAGGAACGCTGATCTCCAGcaagaccagcaacacaggccATCATCTAACCATCTCTCATTCCTTTCACAACCTGGCTCAGCTCCCTCCAACATATGAAGCTGTTATGAAACCTGATATTAACCGTTATTCCTCCCTCAAGAGactagAAAAAGATCTGGATGATTACACAAGTTATTATACCTCAAAAAGACGACCCAATGAGGCACCACCTTCCTTCCACTCCTCCCAGCATCACCTGCACTGGGGTGGTGATTACACTCTAGGGGCAAGGGGTACACTGCCCCTACACACCTCCCGACCCCAAATACATGTACCTACCTCTACGTCCACACCAAATCCTTACCCTTTACCCCAGTCACCATACAGTCCTACCTTTGAGACAGTGAGCCAGCCTCCACGCAGGGTGATGTCTCAAGACCAACTGCTGGCCTTGGGGGAGGGAAACACCCTGTCTTACTTGTCTAAGAACCAGCAGCACCAGTATTACAAAGCCATGGCCACCAGCAAGAGTTCCAACTCAAAGATACTGAGGAAGTCCCACGAACGCCTGCTGGTGTCACCTGAGGACAGAATGATGGGGAGTGCAATGGGTGACTATGGGGGGATGATGTCTCACCTCAGCCACCATAAGAAAACGCAGTCGCAGCAGAACGTGTGTGTGACCCCATCACTTGACCGACACCACATGATCAAGATGAATTCGCACCCAACATCTGGCTGTGAACAGGAGTTCACAAGCATTGCTGCTGCCATGTCAGCTGGCCATGGAACTGGCACTCTGGGTTGGGGGGAGGGTCATGGCTCTGCTGGTGGCGCTGGAACGATAGGCCAAAGTGCCCGCAGAATGGCGTTTGCTGCAAAGCGGCAGAACACCATTGAACAGCTGCACTTCCTCCCTGGGGCAGGGGGAGGCAGTCAGGCACTGTGGACAGGGAGTAAAAACGAAGTCACGGTGTGAAGAAGGGGTGAGAGCAGAAGAAGACAGAAAAGGGATGATAGAAAGATTATACGTATTTGCTCAAATGGAGGAGAGGACTAATACTTTAAGGGAGAGTGTAAGTTAGAATGACAGGATGGATAGGGAAGATGGAAAAAGCTTTAGAGTGAGGAGCAATGTGAGTCTGATAGCAGGAGAACTTGGTATACTGCTAGGACAGAAGTGAGGCAATACATTGTTCTGGAGATCCATTTTTGCCCCTTGCCGCTTGTTGCTAAGAAACAGCATAAGATACACCCTTGTTATGTGAAGGTATTTTTAGGATGAAACTATGTGGATAACTAAGGTTCCTAGTTTTAACTCATCTGactgtgtatacagtatatacgtATTCTTGGAAACATTGCATCTACAACAATTGAGCCATACTTTTAGAACATTTTacggttaaaaaaaagaaactattttGAAGGTTTTCTCCAACACAAACCTTCTCTAGCAAGTACATGTaagtttatataataataataataatgcttaatACTACTGAGTTTTGTCGGGAAAGGATTTCGTAGGATATTATGGCAGAAAATAAGAGGTGGAAACTTGAATGGTCTCTGATAATAGACAGGTATATTTGTGAAGACTGTATATTTGTGAAATTTCCAGATGTAATGTTATAGCATCACAAATAAACATTGATTAATAAGGTATAATGAATTCCACTGCGGCTTCAAGTGCgcgatgaggaaaaaaaaatgtttccaacAATTAAGTGATTTACGTCATAAATAGTGGTCCAACAGACGTGAAATAATTAAGAAGCTGTGAAGTTGGACACTGACATCCAGTATATTGAACGATATTGCGATACAATTCTTTAGATTCAAGAGTCCTGACTCTTTTATAATTCAGCTTGGGGTAGGCGTGTTTGACTATGAACCTCTGATAATGTGGTGACTATTGtttgtcacatttttttaaagaaaaaattattGATATCTTGGCTTTATTGTGGTACCTTTTAAAAGGTGCCTCTGATAGCAATATGCAGTGGTAATCTTTGATTCATAGGGAAATATTTAAAGAATCTAAAGGCCTTGTAGTTAGAAAATAATATCATCTTTTGCCCAATATGTGGCAAAAAATTAGCTAACAGGCATTGTGCCTGTTCAAGCATGTCTGACCAGTTAAAGgactgctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgacttcCCTAGTCCTGGTTCCTGACATTTGGTCTGTTATCATGGAAGTGTGGCAGAAGACAAATTAATTATGAGCATGCTTTGTTGTCAGCAACACTGCAGACACACAATTTGTAACAGTTGATTACTGTATAAGGTTGGTAGGGGAATGGGAAAGGGGATGGGGAGTTGTTGGACTCTTTATTCCAAGGGCTATTCTGAAACTTTTATCTGTATGTCTCTGCTTCTTTGTTtggtcagtttttttattttattttatttttttaatgatcatgTGTCAGTGTAAGTGACAcagctgtagaaaaaaaatgcataaaacaaCAGAACAAGTTCTGATATAGCTAACTATATAATCTGCCAGGCTGAATACACTGTAATATATTAAGATATATGTTATTTTCTGATTAACGAGGAGGCTGGTTTTTTTGGTTAAAGACGTGTATATTTCTCCACTGTATACTCACCGGACACTCATAGGCAGTAGTGTTGTGGATGCCTGAGACAGTTCATATGCTtgaaatatacagaaaaataaacagacctGAAATATGTCCTTAAAAAATAcccttaaaattattatttcagcttttctttctACTAAAGTTATTCCAGTATAAAACGTATAAGAATTTTATATcgatttatacagtataaaaaagaCTGAATTCAATTCCGTGTTCAAACCAATTATCAGTGTTCAGATCATAGTTCATGTTTGCTTCCTTTTGCTTCCATTTCTGTGACTTTCCTTTTTTGTTACTATACAACTTCCTAGTGGATCCTATACTTTGTAATTAATGACAGAAAAGAAGCAATTAAActgaaaagaggaaaagcaTGAAGATGTCAAAAAAGCCAGTGTTGATGTCATTACTGCTGATTAGTGATGTCAAGGTGTGTAtgtttcctgtttgtgtgtctgtgtttctgtgcctGTGTGTATTTCTGAATCTGTCTTTTGGAATGCTGAATCTCCCATTTTATCTGACTTTTATCTGAACTGTCAGACAATGTGCAAGGAAAATTAAACCCCCCAAATgacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479803 lncRNA downstream 53656 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 181495 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 203318 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 328648 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 331688 11997070 ~ 11997470 (-) True G404241
TU480108 lncRNA upstream 165900 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 187776 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 226509 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 227961 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 240701 12589272 ~ 12591533 (-) True G404687
XM_034301544.1 mRNA downstream 11267 12308795 ~ 12317891 (-) True znf865
XM_026928333.2 mRNA downstream 22101 12291742 ~ 12307057 (-) True dbpa
XM_034301705.1 mRNA downstream 72786 12148859 ~ 12256372 (-) False grin2da
XM_034301703.1 mRNA downstream 72787 12145598 ~ 12256371 (-) False grin2da
XM_026928119.2 mRNA upstream 6671 12355242 ~ 12391362 (-) True cnot3b
XM_026928121.2 mRNA upstream 7690 12356261 ~ 12391362 (-) False cnot3b
XM_026928120.2 mRNA upstream 7690 12356261 ~ 12391362 (-) False cnot3b
XM_034301648.1 mRNA upstream 50969 12399540 ~ 12414792 (-) False u2af2b
XM_026928271.2 mRNA upstream 50969 12399540 ~ 12414780 (-) False u2af2b
trnay-gua_21 other downstream 505195 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 506694 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 508194 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 509687 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 511184 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 82424 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 221893 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 223022 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 225028 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 226169 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile