RNA id: XM_026927862.2


Basic Information

Item Value
RNA id XM_026927862.2
length 4161
RNA type mRNA
GC content 0.42
exon number 9
gene id zgc:194578
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12447738 ~ 12462356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttcctgtgtctgtgtcgAGGGGAGGCAGAGTCTCTGGCGCTGTTTGTTGGCTTTTCTCAGGTAGCAGCAACCGGAAGCGGAAATTACCCCTGGGTTCGGGGAGTCTCAGCTTCCAGTCGTCCctgtcatccatccatccatccatccgatccgtccatctatccatccagtTTCTCAAAGCATTGTAGGTAACACACCAGGTACCATGACCCAGTCAATGATACGTAGAACCCTCAAAAATCTCGTTCAGAATTTCTCTGAGGCTGAGGTGAAGGTGAGAGAGGCGACCTCTAATGACCCCTGGGGGCCGTCCAGCTCACAGATGGCGGACATCTCGGACCTGACCTACAACGTGGTGGCATGCAACGAAATTATGGGAATGTTGTGGAAGCGCCTGAACGATGACAAAAACTGGCGGCATGTATACAAGTCTTTAACACTACTAGAGTGTCTCCTGAAAACCGGTTCTGACCGCATTCCGAAGCAAAGTCAGGAGaacattcatattattaaacCGCTGATAGAGTATCGTTTCACAGACAAGGACGGGAAAGACCAGGGTGTGAATGTCAGGGAGAAAGCCAAGATAGTGTTGTTACTTATACAAGATGAGGAGAAACgtaaagaagagagagagtttgCCATGAAGACTAAGGACAAACTGGCAACTgCCTCTTCAGAGGCCAGTGACAAAGTAAAGACCGAGATTCCTTCATATACGGGGCTGCCATCCCTGGACAACATCCCCTCAGTGGCAGATCTGACAGCCAGCATGgcaaagaaaaaggaagagaggaggatactagaggaaaagaagaaagaagaagagagacgTGCAAAGGAAGGCGACACAGAGCCTGACCTGTGGGAACAAGCAGCAACTGCAGCACCTCCTTCCAGCTCGGATCCCTGGGGAGCTCCAGCTGATGCTCCAAAAGCCGTGGGTCCTGCTACGAACGACCCGTGGGGCACACCAACAAATGACTCCCAAGATTCAAATATGGGTTCCAGTGATCCTTGGGGTGAGTCGGCGGATAAAGTGAAAGACAATGCCAATCCTTCTAACGATCCATGGGCTGGTTTACCAGATGAGAAGATTTCACCTCCTGCCAGAAACTGTCCATGGGGTGATTCAGCAGACCCTACAGAAGACAAAGGTGTAGCTACTAATGACCCCTGGGGCACGTCAAATGACTTGGTAGCAAATTCACAACCAGCGAAGACAGATCCTTGGGGTGCACCAGTAGATTCTGCAGAAAAGTCTGCTCCTGCAGCATCAGACCCCTGGGAGACACCGTCGGCGCCACCTCTGGCTAAGTCGGATCCATGGGGTGGGGATAATGGAACTTCAGCAGTGTCACCCACTGATCCCTTTAGTGAAGGGCCCAAAGCTGATCCATGGGGCACATTAGCCTCTTCGCCACTTTCAACTAATGATCCCTGGGGTGCTCCGGCAGCTCCCACTGATGCCTCAGCAAAAGCTGACCCCTTTGGTGATGGAGGAAACTCGGCTGCTTGGGGGGTTCCTGCAGAGGCTGACGTATCCTCATCCGTGCCCACTGAAGACTCCAAAAAGCCATCCAGTTTCTTGGGGGAAGGAGCCTCATTGGTGGATCTCGACTGTCTCATGTCAACAGGGAATTAAATTACCCAAGCCTCTACTTCGGACCATTCAGATTAGATAATGTTTTGTGGATAGATGTTATCATTGTAGGTGTAACTGTCCTCCTTTCCCCTCTGTTTTCAGCACTCTGTTCATTTCTTCCATCTCTCTGCTTTCTGATTTGGTTTGTTTCGCGTGTGCTGCTTACTGCTTGCTCTTTTTGCTTTGTACTAAACTAAAGTTCCATGGTTGCATCATTTTTGCAGTTTCCATccaacacgtttttttttttttaaatttacccCATGATGGTTTGATCATCTCTTGCGTTCTTAAACCCACCTGTGGCACCTCCAACCCATCAGACCACCTTCTTTCATTTGGTCCTGCCTAAAACGGATATACAGAATGGTACAACCCAGCAGTCTGGGACGTCTTAATGgggaaatgaaaatgttatcATTTGGAGAGTTCTTTAGGAGTGGAACAGTGAAATCTGTGGGtggtatttaattattttttatttatttattttttatttattcagtttttcaaTCACCCATAGACATCTACCTTTCATACATTCCCTTACTAAATGCCAGCTTAGAGCCTACTgggcgtgtgtatatgtgacaatatttaaaatcaataaGCAGCAATATGCTTTATGTGTAGccttttttttcacagtggTAGTCCGGAAATTACGAAACTTGGTTTATTGTTGTTGGTCTTTCTCATCTACTATTCTTCTAAGACATTAATGACATATCTGATGAGTACAGGAGCAAgttataattttctttttatttatatggatAAAGTTGTATAATTTAATCTGGTGAATACATTGTGCTTTTGGGATCATTGGGTTCAAAGCCAAAACATTTAAAGCCATGAAGCCGTTCCCTGATTAATGTTACTTTACTCCCTACTCTAAAGCCACAGATTAAAGCTCTCTGTCACTACAATGGATTTCTGTCATAGCGACCTAGTGGAGGTCTTTGTGATCGATGTGATCGATGTGATCGATGTGATCAGTGCAGTATATACGAGGGTATGCACAGAGAATGCTATCACGTAATTAGTGGAAAATTCATTGCTATGTTTTCATACAAGTTATCTTCGCTCCCCTGCATGGCCCCGATGCTCCTCAACAAGTGCAGCGTGAAATTGGGAGgttgttgtaaatgtttttcGACATCTGTGTGACATTCTATGTCCAAAATTTGAGCAGAACAACAGTACGCATGAcgcaacacaaaaaaacaccatgaaGAAACTATCAAAGTTTTAGCAATGCTTCTACATGGCTTAAAAGCACAGAAAGTAACAGTAGTTCCTTACCTGCGTATATatagtttcttttttaataactcCCCTTTCACAATATACCAAaatacctgcattttttttctcactttaatCCTTGCTAGAGCCGTCCAAATACGTTGTCATCACATTACAGTCATCTGTAAGTTGTAAGCCACACAGATTTGGCAACACGTTCATACTGTCGaactggcattaaaaaaaaagttgcgaTTCTCAAAATGTGAAGCAAGATTCTCGCAGTGTCAACTTTTCATATGTAAAACTCTCAATGCTGACAGCTGATTCTAAAGCCGTTTCCTTTCCACACTATACCCAGGGTGGTAGCCTCACTACTTTTTATATCAAGtactttataattaattaaacttgTCTTGTCGATAGAGCTGTATGGTAAAACTGATaaacactatttttttcttagtCTGCCCAATATGCATTTTAATCCAAGAGGTTATTCATCTGTCTGTTCTTATCTATTAGGAAGAAACAAGACAAATGGCTCAGGCTGCTTAATGAAACCAAATTGTTTGAGAACAAATTTGTCAGGtagtttactgtttttttcagttAGCTATTAGTTGTCAATTGAAGGAGAGGTGACTTCAGTGATGGATTTAGCTTAATTTTCCATTAATTCATCAACATTTTGGCTATTTTTGTTACACAGGGTGCCTTGTATCCCGTGTAGGTTATGTCAACCAAAATACAACTTACAGTTGACTGTATGGCAGTGTATTTGGTACAGCTATAGAGAAAATAGACCTAGTAAAGTAGTCGAGCTTTAAACCTGCACAATCTGTGTTGTGATGTTGGTCGTCTGAATGAGCaactcaaattcaaatttcaaataaGTATTGAATATTGTAgtcaaatgtaaaaagaaaaaaaaacaatccgtATTTTGTCATTGAGACAAGACTATCTATCCATTTATCTATGtatccttatttatttatttatttatttattgattgattgattgattgattgattgtgatTTTGTAACCTTCTATATTGACCTTAACATCTTACCATTAATGCTGGACATACACTATAATTTCACTTCACTACTATGAAAGGAAATTCGAATGAGTGCTGTGCTGTACATATAAGTTGTATTTTGGATGGTAAAGGAATATATTTATTCTATTATGAGTGTTGTTTCTTGTGAATGTGTACACTggaagaataaaataaacaaaggtaTGAATTCAGGTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479803 lncRNA downstream 172236 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 300075 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 321898 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 447228 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 450268 11997070 ~ 11997470 (-) True G404241
TU480108 lncRNA upstream 52115 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 73991 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 112724 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 114176 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 126916 12589272 ~ 12591533 (-) True G404687
XM_034301702.1 mRNA downstream 7391 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928356.2 mRNA downstream 7391 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928355.2 mRNA downstream 7391 12434972 ~ 12440347 (-) True si:ch211-232m10.6
XM_026927850.2 mRNA downstream 20349 12420503 ~ 12427389 (-) True ccdc106b
XM_034301648.1 mRNA downstream 32946 12399540 ~ 12414792 (-) False u2af2b
XM_034301442.1 mRNA upstream 3381 12465737 ~ 12482142 (-) True styk1a
XM_026928401.2 mRNA upstream 52960 12515316 ~ 12553760 (-) False fam131ba
XM_026928400.2 mRNA upstream 52960 12515316 ~ 12553760 (-) False fam131ba
XM_026928399.2 mRNA upstream 52960 12515316 ~ 12553760 (-) False fam131ba
XM_026928398.2 mRNA upstream 52960 12515316 ~ 12553760 (-) False fam131ba
trnay-gua_21 other downstream 623775 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 625274 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 626774 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 628267 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 629764 11817887 ~ 11817974 (-) True trnay-gua_17
trnav-cac_22 other upstream 108108 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 109237 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 111243 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 112384 12574740 ~ 12574815 (-) True trnav-aac_24
trnav-aac_25 other upstream 114376 12576732 ~ 12576804 (-) True trnav-aac_25

Expression Profile