RNA id: XM_026927874.2


Basic Information

Item Value
RNA id XM_026927874.2
length 4768
RNA type mRNA
GC content 0.48
exon number 21
gene id atp1a3a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15165188 ~ 15206951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCGGCTCTTCATTCTCAGCAGCAGGGCTCGCGCGCGGTTCAGCGCTCTTCCTCAGCGCGCTCTGTTTCCTGCGCCGCGTCCTGCGTCCTCTCACCTTCCATCCATATAACAAACAACCCGATGTGCTGTCCTCTAACCGCACTCTCTTCATGACCTTGGCTGTTTCTGTTATTATTCACCATATAAGGAATGGGTTATCCATTTAACTGATCTATTTTCGAGCATCCGCTTGTGTCTGAAGGGTGTTTCTCCTGCAGGACGCGACCTCCTCGTTTTCTGCATCTTTATTTCTGATCGACTGAAAACAAGCGCCGCTTGATCACCGCCTGAAATGGGGTACGGACGGTCAGACAGCTACCGCGTGGCAACCACGCAGGACAACGATGAGAAGGAGTCTCCCAAGAAGAAGGGAGGGAAAGATCTTGATGACCTGAAGAAGGAGGTGCCACTGACAGAGCATAAGATGTCCATTGAGGAAGTATGCCGAAAGTTCAACACTGACATTGTGCAGgGTCTAACTAATGCTAAAGCAGCTGAGTTTCTGGCCCGGGATGGTCCAAACGCACTCACTCCTCCACCCACTACCCCAGAGTGGGTTAAGTTTTGCCGCCAGCTCTTTGGGGGCTTCTCCATCCTACTATGGATTGGAGCCATCCTCTGCTTCCTGGCCTATGCCATCCAGGCAGTCACAGAAGACGAACCAGCTGGAGACAACTTGTACCTGGGCATCGTCCTATCTGCTGTGGTTATCATTACTGGCTGCTTCTCCTACTTCCAGGAGGCTAAGAGCTCAAAGATCATGGAGTCCTTCAAAAACATGGTGCCCCAGCAAGCGTTAGTGATCCGTGAGGGGGAGAAGCTGCAGATTAATGCTGAGGAGGTGGTAGCTGGAGATTTGGTGGAGGTGAAAGGAGGAGACAGGATCCCTGCTGATCTAAGAATCATCTCTGCTCATGGTTgcaagGTTGACAACTCCTCACTGACAGGTGAATCTGAGCCTCAGACCAGGTCACCTGACTGCACCCATGACAACCCCCTGGAGACCCGCAACATTGCCTTTTTCTCAACCAACTGTGTTGAAGGTACGGCGCGCGGCATTGTGGTGTGCACTGGTGATCGAACTGTCATGGGTCGCATTGCCACTCTGACCTCCGGCCTTGAGACGGGCAAGACCCCCATCGCCAAAGAGATTGAGCACTTCATCCACATCATCACAGGCGTGGCTGTTTTCCTGGGAGTCACCTTTTTCATCCTGTCCATCATCTTAGGCTACTCCTGGTTGGAGGCCGTTATCTTCCTCATTGGCATCATTGTGGCAAATGTGCCTGAAGGACTCCTAGCCACTGTCACTgTATGTCTGACCCTTACAGCTAAACGCATGGCTCGTAAGAACTGCCTGGTGAAGAACCTTGAAGCTGTTGAGACTTTGGGTTCCACTTCCACCATCTGCTCAGATAAGACTGGCACCCTGACACAGAACCGCATGACTGTGGCCCATATGTGGTTCGATAATCAGATCCATGAGGCCGACACTACTGAGGACCAGTCTGGGACATCCTTCGATAAAACATCTGTGACGTGGGTGTCACTGGCCCGTGTGGCGGCACTCTGTAATAGGGCAGTGTTTAAGGCAGGGCAGGAGTCTCTGCCAATTCTCAAGCGGGATGTGGCTGGTGATGCCTCTGAATCAGCTCTGCTGAAGTGTATCGAGCTCTCCTGTGGCTCGGTCAAAGCCATGAGGGACAAGAACAAGAAGGTGGCTGAGATTCCCTTTAACTCGACCAACAAGTACCAGCTTTCAGTGCATGAGACCGAGGACACAAATGATAACCGCTACATGCTGGTGATGAAGGGCGCCCCAGAGCGTATTCTGGAACGTTGTTCCACCATCATGATGCAGGGTAAAGAGCAGCCCATGGATGAGGAGATGAAGGAGGCCTTCCAGAACGCCTATCTGGAGTTGGGAGGACTGGGAGAGAGAGTCCTGGGTTTCTGCCATTTGTTTTTGCCCGAGGACCAGTACCCTAAAGGGTTTGCTTTTGATACAGATGATGTGAACTTCCAGACAGATAATCTTTGCTTTGTGGGTCTGATGTCTATGATCGACCCCCCGCGTGCTGCGGTGCCTGATGCTGTGGGCAAATGCAGATCAGCTGGCATAAAGGTCATCATGGTGACAGGCGACCACCCAATCACAGCCAAGGCCATCGCCAAGGGAGTAGGTATCATCTCTGAAGGCAACGAGACAGTGGAGGACATCGCTGCTCGTCTTAATATCCCTGTTAGCCAGGTCAACCCCAGGGATGCAAAAGCATGTGTGATCCATGGCTCGGATCTGAAAGATCTGACCCAGGAGCAGATGGATGAAGTTCTGAAGAACCATACCGAGATTGTCTTTGCCAGGACCTCCCCACAGCAGAAGCTTATCATTGTAGAGGGCTGCCAgagacagGGTGCCATTGTGGCTGTGACTGGTGATGGCGTAAATGACTCCCCGGCTTTGAAGAAAGCAGACATCGGCGTGGCCATGGGAATCTCAGGCTCAGATGTTTCGAAGCAGGCAGCTGACATGATCCTGCTAGATGACAACTTTGCCTCCATTGTCACAGGCGTGgaagaggGGCGTCTGATCTTTGATAACCTAAAGAAATCAATCGCTTACACCTTGACAAGCAACATTCCTGAAATCACTCCCTTTCTGTTCTTCATCCTGGTTAACATTCCTCTTCCTCTTGGGACCATCACCATTCTGTGCATCGACCTGGGTACTGACATgGTGCCTGCCATCTCCTTGGCCTATGAAGCAGCAGAGAGCGACATCATGAAGCGCCAGCCCCGTAATCCTCTGAGAGACAAGCTGGTTAATGAGCGTCTCATCAGCATTGCCTATGGACAGATTGGGATGATTCAGGCTCTAGGAGGTTTCTTTGCCTACTTTGTGATCATGGCTGAGAATGGTTTCTTGCCCTCCCTGCTGGTGGGCATTCGGCTTAACTGGGATGATCGGTCCAACAATGACCTGGAGGACAGCTACGGCCAGCAATGGacctATGAGCAGAGGAAAATCGTGGAGTTCACCTGTCATACAGCTTTCTTCGTGAGCATCgtggtggtgcagtgggccGATGTCATAATCTGCAAGACCCGTCGCAACTCTGTGTTCCAGCAGGGCATGAAGAATAAGATTCTGATCTTCGGACTTTTTGAGGAGACAGCTTTGGCTGCCTTCCTTTCTTATTGCCCAGGCATGGACGTGGCCCTTAGAATGTACCCACTGAAgCCCAGTTGGTGGTTCTGTGCATTTCCGTACAGCTTCCTCATCTTTGTTTATGATGAAATTCGAAAACTCATCTTGCGCAGAAACCCGGGAGGTTGGGTTGAAAAGGAGACCTACTATTAAATCATCactttttcctttacttttcaTTCTGTCCCTATTTGCCTGCAcagcttctttctctctctctctccccccttctctctctctctctaaataacAACCTAAAATAGAATAAGCAAAACCAGACCATAATAACACCCTGTCCTATTACCTTctttcaagaaataaaaaaaaataaaatacagatgcTAATAAGATATGCGAACCAACAGTGATAGAGAGAACGAGGTTGGACTCCTTTCTCTTCGTTCACATTTTTTGGTTTTCTACTGTGACCAAAACACTACAGCTGATTTTTTGCCAATCTCTTCTCCATGCTGTTTATTGATATCTTTCAACACTGTCAATGTTGTACTGAATACTAGTGACACTGCTGATTCTTGTCGTAATATAAGTCGTGACCAACTGAGGACGCGAATGTCCTTTGCACACACTGCCACTTATTTTTCCTCCTCAGACCCCCTGTTTGTCCcccttcactctctcttttaACCACTCTTCTCCCTCCCTGCATCCTTCTTGTTACCCCCTGCTGAAACATAAGTGTAATGAAACAACAGCTACTGCCTTTCAGTCATCTAAGAAATTAACAGTACCTTCATCTCTggtctgtttctcttctctgaTACTCTTCCCACCctgctgtctctcactctctgccttttctctctgccactgtgttttcttttgtcacttttttgttCAGGCTCTGAGTGCTATCTGTTTTTCCCTCCTAAATGACAAGCAACATTCTCTCGATACCATCCAAATGACTACCCACCGTCCTGCCCTGACCTAAcgtccctccctctctgtctgtatgtctgtctgtgaaTAAAAATCCCTGCACCTCTCCTGCTCTCCTTTCAAGAAACGACGAAAATACAgtctttgtgtgttttaggaatCCAGTTTCATTCTTTAAATAAGTGAGgaaaatagatgaaaaaaaagttaaataaggCTATGTATCTTACCTGGAAAACAGGagcaagaaaattaaataaaaaagaagaacctctctttttttcagtttggtgtcagtttgtttttgtgtgtgaccTTAATGAATTGCTAAGTTATAGATATAAGCATTCAGTGGTCTGTGTAATTCATACAGTGCGTTAATCTTTTTATTGTTGACACGTGTAAATTAGGACTGGAacaacatgatgatgatgataattatgGTCTGATAATTGTAGAATTCAGTATCATGGTGTTCTTTGTCAAGGTGTGTGCTTTCTGCTGCAGATAATGTTTTCCTTTACAACTGAAAAGAGCAACAGCAAAACATGAAATTACCGCAGAAAGTTGGGAAATTTGCTAGAacatttacttaaaataaaaaatgtttaaaaacaa

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481643 lncRNA downstream 112344 15052587 ~ 15052844 (-) True G405983
TU481642 lncRNA downstream 113000 15051955 ~ 15052188 (-) True G405982
TU481641 lncRNA downstream 113291 15051689 ~ 15051897 (-) True G405981
TU481636 lncRNA downstream 116010 15048721 ~ 15049178 (-) True G405976
TU481627 lncRNA downstream 145948 15018686 ~ 15019240 (-) True G405967
TU481714 lncRNA upstream 250 15207201 ~ 15207531 (-) True G406054
TU481740 lncRNA upstream 49851 15256802 ~ 15257054 (-) True G406078
TU481741 lncRNA upstream 50774 15257725 ~ 15257945 (-) True G406079
TU481745 lncRNA upstream 64722 15271673 ~ 15272249 (-) True G406083
TU481748 lncRNA upstream 66057 15273008 ~ 15273429 (-) True G406086
XM_034301470.1 mRNA downstream 28398 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA downstream 28436 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA downstream 28436 15073669 ~ 15136752 (-) True LOC113534955
XM_026928228.2 mRNA downstream 200377 14931143 ~ 14964811 (-) False cica
TU481617 other downstream 151200 14967476 ~ 15013988 (-) True G405961
trnat-ugu_15 other downstream 619010 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 621899 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 1045530 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 1081342 14081372 ~ 14083846 (-) True npy

Expression Profile