RNA id: XM_026927909.2


Basic Information

Item Value
RNA id XM_026927909.2
length 2602
RNA type mRNA
GC content 0.53
exon number 11
gene id trim46b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13409057 ~ 13443086 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTTCCGactcggaaaaaaaaaaaaaaaagaagaagaagacgtcACCTCAACTCGGAAATCCTACTCGGGAAATCGGGACGGTCACCTCacccccgagttcagcaagtgacatcaaatcaacatggcagctcacagcatgagcagtaaacacagcagcacttctgaCCTTAAAtctGTTTTAGACGCCAGAGAGGATGGCGCATGCGCTCTGGGGAGGCGAGAGGATGCTGGTCGCTATGGAAACGGGATGCCGGCACGCTGCGGGGATGTCGCACAGAGGCGGGGAAGGacagggaaaagaaaagaaaaaaaccaacaGGCTTGAGAGTGGCGCACTGACGACGCCGGCATCCCACTAACCCACATTCCCCTGCAGTCCGAGGGCGCGGAGCTGGGAGAAGGACGTGCTGCTTTCTTTAACCCGTTAAGGGCTGCTACACCCGCAACACACAGCAATGGTAACGACTGGCGTGTATTTGTGCTCGTTTGTTAAGCGCCTGCTTTAGACTGAGCCAGGTGACTGAATAGCCGCGTACTGTAACGCGTAAGGAGTGAGGTGTGGTTCCTCCCTGGGACACCGTGTGATCCCTGGGTATGGCAGCCTTAAGCGAAGAAAACCCGGTGTAGATTTGATTTGCTCTTATAGCACTAATCTAACGTGTCGGCCATGCTGTACGCGTCCACCGGGATGTTAGAGCTCCGGTAACGGGGGGGATTCACTTCCATCATGGCGCCCAAATACCAGGTGAAGTCTAACATGAAGAGCATGGAGCGGGAACTCCAGTGTCCAGTGTGTAAGGACATCGTGAAGCAGCCGGTGGTGCTTCCTTGCCAGCACagcgtgtgtttgctgtgtgcgTCTGAGGTGCTGGTGCAGAGCGGCTATCCTCAGCCCGAGCTGCCCCCGGAGCCCCACTCTCCCGCttccacaccacacacacgctcgCCGCGCCAGGCCCACCGGTCTGTAGATCGCCCATTGCGTCCTGGTTTTGGGACATATCCAGGGCGCAGGCGCAAGGAGGCCTCGACCCAGATCATGCTCTTCCCTTGTGTGCCCTGTGGTCGAGATGTGGAACTGGGTGAGAGAGGACTGGTGGACTGTATGAGGAACCTCACACTGGAGCGCATAGTGGAAAGGTACAGGCACACAGTAAGTCTGGGCAGCGTGGCAGTGATGTGTCAGTTCTGTAAGTCTCCTCAGACTATGGAGGCCACTAAAGGCTGTGCTGACTGCAGGGCGAGTTTCTGTAACGAGTGCTTTAAGCTCTACCACCCGTGGGGTACTCCGCGCGCCCAGCACGAGCATGTACAACCCACACTCAACTTCAGACCCAAGgtgTTGACATGCACAGAGCATGATCAGGAAAAGTTACAGTTCTACTGTAAAACGTGCCAAAGGCTCCTCTGCTCCCTCTGTAAGCTGCGTCGGGCTCATGCAGGTCACAAAATTGTTCCTGTTAGCCAGGCATACCAGGCACTCAAGGAAAAAATCAGCAAGGAGCTAAACTACATCCTCTCCAATCAGGCTACAGTCCTGACTCAAATCACACAGCTGGAGAATGCCATCACCCAGACTGAGgtgaacAGTGTAGCAGCCCGTGAAcagctctctcagtgtgtgaggGAGTTGACAGCTCTACTCTCAGAGCGGCAGGTCATCCTGGCTCAGGCCCTGGAAAACTCACGCCAGAGGCGGAGCGATGCTTTAGCCAGTCAGGTAGCAGAGAGGCGCAGCTTGTTGGAACATGCTGGCCTGATGGCATTTACCCAGGAGCTGCTGAAAGAGACAGATTCAGCTTGCTTTGTACATGCAGCCAGGCAAACATATAACAGgCTGGCCCAGTCTATTGAGTCCCTGcagagtttctctctctctgctgatcCCTCATTCAGACACTTTCAACTGGACGTCTCCAGAGAGCTTAAACTTCTCACTGACCTAAACTTTATTCAAGCCCCTTTAGCCCCTGTGATTGACACCCAGCGCACTCTGGCCTACGATCAGCTCTTCCTGTGCTGGCGACTGCCGCAGGAGTCCTCCCCCGCCTGGCACTATTCTGTGGAGTATCGTCGCCGGGGCGTGGTGCCAGGGGGCGGGACGAGAGCTGGCCTCCGCGGGGGGTTGGCTGGAGCCCGCTGGGGCTGGCAGCGATTAGACGAGGTGAGCGGGACCAGTGCTGTGATCAACAGGCTGGAGATGGACAGCGTGTACGTTCTCAGAGTGAGGGGCTGCAATAAAGCTGGTTTTGGAGAGTACAGCGAAGAAGTGTACTTACACACTCCACCAGCTCCAgCtagtctttctgtttttttttttgttttttttctgtcagccATTTATGCTTgcttttttgttctcttttctgTGTCTGAGCCATATCCACCAAGTTGTCTTACTTCCTCAGAACCTTGTCTTTGTGATGTATTTTGTTATGAGATTATATTTGTCCCATACAATTACCTGCTACACTGAGTACCACCAAAGTACCTCCAAATTTGGTAATTGTGGAAGTCGACAGATGACAAAAGTAAGCATGAAGTCTGCTATCTGGacaaatattcatattaaactGCTAAAACGAGTAAGATTTAATGAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480641 lncRNA downstream 46629 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 194925 13218279 ~ 13218480 (-) True G405032
TU480487 lncRNA downstream 272750 13140420 ~ 13140655 (-) True G404997
TU480472 lncRNA downstream 285749 13127399 ~ 13127656 (-) True G404982
TU480449 lncRNA downstream 300764 13112433 ~ 13112641 (-) True G404959
TU480713 lncRNA upstream 9313 13452399 ~ 13454797 (-) True G405206
TU480772 lncRNA upstream 98917 13542003 ~ 13544405 (-) False rps27.1
XR_003403560.2 lncRNA upstream 116803 13559889 ~ 13563949 (-) True LOC113535067
TU480893 lncRNA upstream 157941 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 212319 13655405 ~ 13706542 (-) True G405368
XM_026927904.2 mRNA downstream 20572 13389916 ~ 13392833 (-) True dpm3
XM_034301473.1 mRNA downstream 321659 13087487 ~ 13091746 (-) True LOC117596411
XM_034301498.1 mRNA downstream 467028 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 487141 12915978 ~ 12926264 (-) True scamp3
XM_034301491.1 mRNA upstream 46863 13489949 ~ 13526100 (-) True chrna11
XM_026928592.2 mRNA upstream 98949 13542035 ~ 13544505 (-) True rps27.1
XM_034301730.1 mRNA upstream 105331 13548417 ~ 13549215 (-) True LOC113535306
XM_026928305.2 mRNA upstream 113072 13556158 ~ 13558631 (-) True cks1b
XM_034301479.1 mRNA upstream 132598 13575684 ~ 13586550 (-) True aqp10b
TU480639 other downstream 20670 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 272290 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 833754 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 834604 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 835745 12577588 ~ 12577660 (-) True trnav-cac_25
TU480779 other upstream 113070 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 316675 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 316675 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 638286 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 671533 14114619 ~ 14119658 (-) True G405588

Expression Profile