RNA id: XM_026928099.2


Basic Information

Item Value
RNA id XM_026928099.2
length 2240
RNA type mRNA
GC content 0.41
exon number 10
gene id dazl
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14172834 ~ 14195466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagcgAGCTGGCCCTTGGTGTACACAGGAACCCTCCCTGATTGAATGGCTGTAGATCAGTCGGGAAGCTGGAGGCTGATTAGTGCCCAGGTGTAGGCGCCTGTTCCTCCTCCATTTTCTCACAACGCTTGAAAGAAACGGGAAGGCAATTTGGGCAGACATtaatttattcacttattttaaCGGTTTTAGACATGGATCTCCAGAAACAGCGGCATGGCGTGGCGATGTCTAACGGCTTCATCTTACCGGAGGGCAAAATGACGCCCAACACACTGTTTGTGGGAGGCATAGACATGAAGGTTGAAGAGAATGAGATCCGAGACTTCTTCGCTCGGTACGGCGCAGTGAAGGAGGTGAAGATCATCACCTACAGGGGTGGAATCTGCAAAGGTTATGGTTTTGTTTACTTCAGCGAGGATGTCGACATCCAGACTATCGTTGAACAACAGGTCACTTTTAAAGGAAAGAAACTCAAACTGGGCCCTGCCATCATGAAGGAGCGGAGTTCTCGTGAGTCAGGTTTCCAAGGTTCTGTCCAGTCACCTTTGATTGGTCCATCACAGTGGGTAAGCCCCTCCCCCTGTGTGTACTGTACCTGCTGCCCTCCCAGCCTGGTTACACCCACTGTGCTCAGTGGAGGTGCACAGTACCTGCAGccaTATTCTTACCCAAGTTTTCCAGGAGTAATGATCCCTCAGATGCCTATGAATTATGCACAGACAGCCTACGCCTACCCGTACTCCCTGCCACAGTGGTGTGGTGACCAGAGGACACGGTTTATGAATCAgAACTTTGTGGACTGTGGAGTCCAGACGTTGCTGACACTTCTGTAGTCCGGTTTAGATGTGGACTGTCTTTCCGGACCAGCACCCAAGGAAACCGAGGCTGATGTCTTCATGAAAATGACATCCAATTGTGGGAAAGCATGTTCAGCATTCTACCTCTGGTGTGACTCTGTGTTTCTGGGAACAAACGTCCCACTCTGGGTGACATGTCAGTGTGATGGCAAATCATGGTTATGTGGTCAAACTTCCAATAGAAGGCtgcatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgaatacaatttacacaaatgttttTGTCAGTTTATTTGTTATTGTCCTTGCTCTGCCTTTGTCATaccaaacctttaaaaaaaaaaaaaaaagacacttttaAAATCACAAAGGTTTTTGTTTCATCTATGTTGgttattttaatgtttgcaCCTCCCTCGTTCTCCAAATGCTTTTTGATCTCAAGGGGAGGCGACTGTTCTTGAGGCTTCTGTAAATTGTTCAGCAAGTTCAGTTCAgcaaattttataattatatttgttGCATAATCTCATTCATGCTGGCAAAGCTCTATTGATTAACTTCTCAAACCTCATGTCACACATTGTAAGCACTGtcctggttttatttttatttttatatatttattatttattttgaacagGGTTAGGGATTCCAGTGTTAGTATTTTGAATATTTCTCAATGGagttgaggttttttttgggggggtttaTTTGGCTTCATGTGGCTTTGCCCATTTGATtaacatattataataattattataagttATATTGGCTTGACTCTTAATTTCAGATCAGTTGTGAAGAGaagccaggaaaaaaaatcactgcattAAATACCAATGATTGATTGAAaagaaacttttaaaaactTGTTCTGTAAAAATGCTCAGTCACGCAATGGGTTTGGCCAGTTTTAATTCACTAAGTAATGATGGAATAACAATGCTTCACACGTTCACTGGTTGATACTGATGTTTGatatttgtgggttttttttatttaaaggttcATTGTGCTTTTGTCTTCTTTCACTTTGTTAACGGTGGTTTTCTTCAcaagaattgttttatttaaaaataatagggTGATCTGTCTTGAATGGTGAGATTTGCACACGTCATTTTCTTATGGCTGTAACAGATTGCAATACCAACCTAAATAGTTGCTGGTAAGCCATAGGTGTTGAACACTATATTGTTAGCAAACACTTTTATGGAGCCTTTGGCATCTGATGGATTATTTCCTCTTTACATCTCCCATGGCCTCATAAGAACTGTAGTTTCTACTCTGGTTGATGGCATTGGTCGATCACTATTCAGTTTCTTATGTATACTAGTTTAACATAAAAGGTTTGGTGTCTTTTGTCttgtttataaagaaataaagttgaagttaaataaaa

Function

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0048477 oogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0060965 negative regulation of gene silencing by miRNA biological_process
GO:0070935 3'-UTR-mediated mRNA stabilization biological_process
GO:0045495 pole plasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008494 translation activator activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K24980 DAZ; deleted in azoospermia protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481157 lncRNA downstream 95684 14076442 ~ 14077150 (-) True G405575
TU480986 lncRNA downstream 300406 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 303079 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 333001 13815898 ~ 13839833 (-) True G405420
TU480985 lncRNA downstream 357942 13808483 ~ 13814892 (-) True G405419
TU481288 lncRNA upstream 61058 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 109473 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 118273 14313739 ~ 14314834 (-) True G405701
TU481315 lncRNA upstream 183426 14378892 ~ 14385650 (-) True G405707
TU481349 lncRNA upstream 280014 14475480 ~ 14478639 (-) False tpbga
XM_034301504.1 mRNA downstream 4238 14139944 ~ 14168596 (-) False mpp6b
XM_034301505.1 mRNA downstream 4244 14139944 ~ 14168590 (-) True mpp6b
XM_026928309.2 mRNA downstream 88988 14081372 ~ 14083846 (-) False npy
XM_026928422.2 mRNA downstream 98659 14067317 ~ 14074175 (-) False ccdc126
XM_034301712.1 mRNA downstream 98659 14067317 ~ 14074175 (-) False ccdc126
XM_026928095.2 mRNA upstream 489 14195955 ~ 14218170 (-) False tbc1d5
XM_026928093.2 mRNA upstream 489 14195955 ~ 14218170 (-) True tbc1d5
XM_026928094.2 mRNA upstream 1328 14196794 ~ 14212305 (-) False tbc1d5
XM_026928097.2 mRNA upstream 1387 14196853 ~ 14218170 (-) False tbc1d5
XM_034301478.1 mRNA upstream 125399 14320865 ~ 14388466 (-) True arid1ab
TU481171 other downstream 53176 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 88988 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 411279 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 411318 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 614214 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_14 other upstream 347751 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 350640 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 772010 14967476 ~ 15013988 (-) True G405961

Expression Profile