RNA id: XM_034301583.1


Basic Information

Item Value
RNA id XM_034301583.1
length 1035
RNA type mRNA
GC content 0.40
exon number 3
gene id s100s
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13746878 ~ 13750502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttctttctaTCAGTCTGCATCTCTGGCTCTTTGTCACAGACAAAGGAGGCTCTTCAGCAACACTCAGCATGGCTAAAGAACCAAGCACTAACCTGGAGAGCGCCATGCAGATGCTCATCAAGACCTTCCATAAGTACTCAGGGAAAGAAGGGGACAAATACACACTTAGCCGAGGGGAGTTAAGAGAACTACTGACAGAGGAATTGGGAAACTATCTAGGGAATGCACAAGACAAGGATGCCGTGGAGCGAGTGATGAGTGATCTGGACGCCAATAATGATGGTGAGGTGGACTTCACTGAGTTCATCATCCTAATGGGTGCACTCACCGTGGCCTGCAATGACTTCTTCCTTGACAGCCCACCACCAAAGAACAAGCCTGAGCCAAAGTCAGATGCaaaggaaggagagaagaaagagtaATGATGGGATGAGAATGGGAGCATGAGAGAGAAATGTATCAGGTGGTTTCTGTAACCAGGAGTGAACGTCTGAGGAGAAACCCATCTGTTTTGAGCTATTAATTACTTGAAATTTCCAATTATTATGCTTGTCATTACTCTGTGCCCTAAACACATTGAACGCTTTCATTAATTTCAGGAACATATTTGTCCAACCCTAATCTAATTCCCCAGGTAAGCAGAAAAACAACATGCAGCTGTAGAcacttttgtttaaattaaatcctCCTGATGGTACTAAGATACATTTCTTCCATTTTGATGTACATTTTGTGATTTTAGGACCTGATTGTACTAAAGTTCTCCATTAATTTGAAGAGttctaaatacattaaaaaatgcatCTAGTACCCTGACAAAATATCACTGAAACATTCCTGTAATTAACTTGAGGAAACCTATGAAATGGTTAGGATGAAGGGAGGGGTTAACTGTAAGCTCATTTATAACACACGCATTATTAAAAACGTCACCAGTGTTGAACACTTCAATGTGTTTTGCTTCTTTTCAAGGCACCTATTTTGTAGCCTGTTTTGGTAAGTGATATGTATCTTTAtcattacaataaatatgtC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480934 lncRNA downstream 11130 13735536 ~ 13735748 (-) True G405386
TU480913 lncRNA downstream 40336 13655405 ~ 13706542 (-) True G405368
TU480893 lncRNA downstream 140986 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 182929 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 202473 13542003 ~ 13544405 (-) False rps27.1
TU480985 lncRNA upstream 58037 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 65452 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 65452 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA upstream 65452 13815898 ~ 13839833 (-) True G405420
TU481157 lncRNA upstream 325996 14076442 ~ 14077150 (-) True G405575
XM_034301670.1 mRNA downstream 12117 13729127 ~ 13734761 (-) True pygo2
XM_026928285.2 mRNA downstream 12123 13729127 ~ 13734755 (-) False pygo2
XM_034301653.1 mRNA downstream 20723 13689122 ~ 13726155 (-) True cgnb
XM_026928526.2 mRNA downstream 68587 13646267 ~ 13678291 (-) True tuft1b
XM_034301810.1 mRNA downstream 108901 13603327 ~ 13637977 (-) True ubap2l
XM_026928109.2 mRNA upstream 2367 13752813 ~ 13758428 (-) True s100u
XM_026927989.2 mRNA upstream 9719 13760165 ~ 13761557 (-) False s100a11
XM_026928448.2 mRNA upstream 11209 13761655 ~ 13771533 (-) False pbxip1a
XM_026928449.2 mRNA upstream 11209 13761655 ~ 13771533 (-) True pbxip1a
XM_034301496.1 mRNA upstream 11209 13761655 ~ 13771532 (-) False pbxip1a
TU480779 other downstream 188258 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 354143 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 605763 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1167227 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1168077 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 9315 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 9315 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 330926 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 364173 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 792771 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile