RNA id: XM_026928119.2


Basic Information

Item Value
RNA id XM_026928119.2
length 3979
RNA type mRNA
GC content 0.48
exon number 19
gene id cnot3b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12355242 ~ 12391362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGAGCAGCAACGCCTCAACGGAGGAGGTGTTCCTGGTGGCCATCTTTGATGCGCGGAGTGATTGTTTGGCGAATAGAAGTAataggaaataaaaaataaagaccgAAAAAAGTTGGGAAATTGGTAACGGAGCacaagctgaaagaaagagggaaggTGAAACTAAGGAAAATCAGCAAAAGAAGGCATGAAGAAAGCATCCTAGTCAAGTCATGGCTGATAAAAGAAAACTACAAGGTGAAATTGATCGATGTCTAAAAAAAGTCGCAGAAGGAGTAGAACAGTTTGAAGACATTTGGCAAAAGCTTCACAATGCAGCCAATGCCAACCAAAAAGAGAAGTATGAGGCTGACCtcaagaaagagataaagaaatTACAGCGCCTCCGAGACCAGATTAAGACGTGGGTGGCCTCAAACGAGATCAAAGACAAAAGGCAGCTAGTGGACAACCGCAAACTCATAGAGACACAAATGGAGCGCTTTAAAATTGTGGAGCGAGAGACAAAAACGAAAGCGTACTCCAAAGAGGGACTCGGCCTTGCTCAGAAAGTGGACCCTGcgcaaaaagagaaagaggaggttGGACAGTGGCTCACGACAACGATAGACACGTTAAACATGCAGGTGGACCAGTTTGAAAGTGAGGTGGAATCACTCTCAGTCCAGACACggaaaaagaaaggagacaAAGAGAAGCAGGATCGGATAGACGAGCTGAAAAAGTTGATTGAGAGGCACCGCTACCACATTCGTATGCTGGAGACCATTTTGCGAATGCTAGATAACGACTCGGTACAGGTGGATTCCATCCGTAAGATCAAGGATGACGTGGAGTACTACATCGATTCTTCTCAGGATCCTGACTTTGAGGAGAATGAATTCCTCTATGATGACCTGGACCTGGAGGATATATCCCAGCCATTGGTTGCCACATCTCCTCCAGCTCACACGGAGGATGAAATCTTCCAGCACTCCAGTTCTACACCGACATCCACCACTTCGTCTTCCCCAATTCCTCCATCCCCGGCTACTTGCACTACGaATTCTGAGGATGATAAGAAGCGAGGTCGTTCCACAGATAGTGAATTCAGTCagTCTCCAGTAAAGAATGGCAATCCATCATCTCTTTCCTCGTCCTCATCGTCCTCTTCATGTTCGGGATCTTCCTCTACCTCGGTGGTGTCTGTGGCGACCGTGGCAAGCAGCAGCAGCTCGGGAGGCGGGGGTAGCAGCCTCCTGAGCAACATGGGAGGCCATGTACAAAACTCATGCAGCTACAGCTCTGCCATCCAGCAGCAAATGCAGCATGGCCAACAGCAACACCAATCCAAAAATGCCATCAACTCCCAATCCAGCGCCTCTGCCTCTGCAGCTCCCTCCAGTATTCTCTTACCCAGTCCCACATCAACCTCTTCTCCTTCCAGTATCAGTACACCCAGCAACCAAGCCCAGCCTCTGCTCACTCCAAGTCCAGCTTCCAGCCTGAGCCATGCTCTCAGCCTGGGCCTAGCCAAGAGTGGTGCACCGACCACCAGTGGTGTTGGCCAGATTCCCGGCCTTAGTCTTTCAGGGATGCCGGCGTCCAGGACCAGCATGCCAGGGCCCCTGCAAGGTTCCACCCCAGCACCTTATGCCCAGGCTGCTGCATCCGGCACTGCCAATGCCACAGTTAATGCCAGTGTCACAAACTCCAGTGGAGTTCCAACAGCTGGCACAAATGGAAACAGTGCTTCAACAGGCCTCTTGGGGTCAGCACCAGGCACTACAGGGATCAGCAGTGCAGTCTTAGGTCTGGGGACCACACCGACTGCAGTGCAGCCCTCGTCCTTGGTTTCACCCAGCCCTGTTGGAGGGGGATTGGTGCAGACGAGCAGCGTGGGCGTTATTGGGAGTAATGGTGGAAACTCTATATCAGGAAGTGCAACGGCTGTGGGGAGCTCTGGGCTTCCACGGCCACCTAGTGGGCAGAAGCAGAATGGCGGCACAACCTATAGTGCCATAGTAGCAGATAGCGCATCTGATTCTGCCCTCAGCAGTGCCAGCCAGTTACAAAACAACCAAGCCTCAACCTTAAATTCCACAACCAATCTGCCTAAGGACAATGGGTCCAGCCTTCTGGGGTCTATGACTCTTCCTACCAGTTCACCATCGCCCTCGTATAGTGAGAGTAAACCAAGTGGGGGCAGCCTGTTGAATGGACCTCACTCCTTCACACAAGCGGCTGATGCCATCaagccTCAGGAACCGCTCAGTTCTCTGAAATCGATGGCAGAGAGAGCAGCTCAGGTCTCAAGTTTAGAAGGAGAACTCTCTGCGCTACATCTCACTGGAGTAAACAAAGTTGGAGATTGGAATACACGAGTGTGCAATGGTTCAGATATCTTCCCTAGTTCCACAGCCCCGACAGGTCCCCCTACAGCCCCCCAGTCTTCTCTTTCAGAGGTTAACATTCCTCCATCGCTGGGCGTCTGTCCTCTGGGTTCTGTCCCCATCTCCAAAGAGCAGCACTACCAGCACGTTATGCTAGAGGCAGCCTGGACACACATGCCCCACCCGTCAGACTCGGAGAGGATCAGGCAGTACCTGATGAGGAATCCCTGTCCTACGTTGCCTTTCCATCACCAGGTGCCACCACCACACTCAGACTCTGTGGAGTTCTACCAGAGGCTCTCCACGGAGACtctcttcttcattttctaCTACCTTGAGGGCACAAAGGCTCAGTATTTGGCAGCCAAAGCCTTGAAAAAGCAGTCCTGGAGGTTCCACACAAAGTACATGATGTGGTTCCAGAGGCACGAGGAACCTAAGACCATCACTGATGAGTTTGAGCAGGGGACATACATTTACTTTGACTACGAGAAGTGGGGccagaggaagaaagaaggatTCACGTTTGAGTACAGGTATCTTGAGGACCGGGACCTCCAGTGACAGACAATAAGAACTGCAGACTACTGTTGACATTCCTGGACTGAATCCACACTCTCACGCACGTGGTGTGGCGACTCAGATGCTGTTACGAGGCTGTTTTATGTCTCGTTGGTGCATATTGCCTTTGGAGTTTCTCCCAGTACCTACAAAATCCACTTGCccagaactttttccacttaTCACCTTGTTTTAGTAAAACTCTTAAAATCTTGACAGAGCATTCTTGAGCCAAAGAGACACAAGCCTACAAACTTTCGTCCAGCACAGTAGACAACAAACACAAGTCAGATTGTGTTGCTGGTACGATTCGTAGTGCACAAGCAAATGTTAAATATCTGATCTAGCACAAGGAATACTGAGCTGTGAGAGACCAAATTCAATTGCTTATTCTTGAAGTTGTCATCATTTTAAAGCTGGATTAAATGAACTGGCCTGCATTTGATGTGTCTGACTGCAACCATAATCAATAATTCCATTTGCTTCCTCCTTGTAccttaagcatttttttttaattaaatgggACGTTTTAAACATTAGGGTTGTCCACATGCTCATACAGCAATCCAATATACAAGAGTAATTACAATCTATATCTCACTCCATCAATTAATATCCAGCCCCTACTTCTAAGTAAAGATAACGACACTGcccagagtgagagagaattgGAATGAAAAGCAccagcactaaaaaaaaaaaaaaaatcctctaagGTCAGCTTACATGTGTCAGAATTGGACATGCACCCATTACTGAggctcaggaaaaaaaaaaaaaaggtattaaaaGACTTAGTTTGCATGACTGCAGTATTGTGTATGGATCATACAAAACCTTGATTTAGACTGacgaaaagaaaagaaaagaaaaaaaaccttggtcagtttgggatgaattggtacactgacttgtttttggacattcacaaaaaaaaaaaaaaaaaaggacatgcTCTTCTGAAGCATCACTACAGTCGCATTAGGGACAAAATGGCCCACTACGTTCATCTTACTGGCCAGCAATCTGCTTCATTTCACAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12580 CNOT3, NOT3; CCR4-NOT transcription complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479803 lncRNA downstream 79740 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 207579 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 229402 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 354732 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 357772 11997070 ~ 11997470 (-) True G404241
TU480108 lncRNA upstream 123109 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 144985 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 183718 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 185170 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 197910 12589272 ~ 12591533 (-) True G404687
XM_034301807.1 mRNA downstream 6670 12329158 ~ 12348572 (-) False shisa7b
XM_026927829.2 mRNA downstream 6671 12329158 ~ 12348571 (-) True shisa7b
XM_034301544.1 mRNA downstream 37351 12308795 ~ 12317891 (-) True znf865
XM_026928333.2 mRNA downstream 48185 12291742 ~ 12307057 (-) True dbpa
XM_034301705.1 mRNA downstream 98870 12148859 ~ 12256372 (-) False grin2da
XM_034301648.1 mRNA upstream 8178 12399540 ~ 12414792 (-) False u2af2b
XM_026928271.2 mRNA upstream 8178 12399540 ~ 12414780 (-) False u2af2b
XM_026928272.2 mRNA upstream 8178 12399540 ~ 12414778 (-) False u2af2b
XM_034301649.1 mRNA upstream 8178 12399540 ~ 12414777 (-) True u2af2b
XM_026927850.2 mRNA upstream 29141 12420503 ~ 12427389 (-) True ccdc106b
trnay-gua_21 other downstream 531279 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 532778 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 534278 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 535771 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 537268 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 39633 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 179102 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 180231 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 182237 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 183378 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile