RNA id: XM_026928123.2


Basic Information

Item Value
RNA id XM_026928123.2
length 7333
RNA type mRNA
GC content 0.39
exon number 13
gene id LOC113535038
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11844553 ~ 11863767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTAAGAGAGGTCGACCATGTTtgttcagaaacacaacaaaagacGAGTGGATTTAAGTGAATTCAGTCAGTTTGGAAAACAGGATTGTTACTGAGGTGGTTGAACTGATTTATCCAGAAGAACCCAGCAGCAGGGTGAGTGAAGGGTCTACTTGGACGACCACACGGAAAAAAAGACACCTCCATACACGCTATAAAAGCAGGAGCTGGACGCTGGAGTGCTGTACGGAAACCATAAAGTCATCTTTCGGTTTTGGACGTCTGTCTCCGGGGAGTGCTGCTTTATGCTTTATGGATTTTGAACGACCAGACAGAccattttctgaaaaataaacaaaaagtttGAAACAAGTTTCAAAACTGGATGTTGCATTGAATCACCATCACCAAGGATTAACTTTTGCTTGTTCTTGGAGACAAAAATAGTGACAAACTGCTAAGAAAAGGTCACCTGatccattatatatataaattcaggacaatacaaagacaaaaaaaagagggataTTGAACTTCCTGATTAGAAGAGAAACATTTTTCGCTGTTCTGTTGCAGGACTCGTACTTTCTCCAACCTGCAGGCGTATAATTTTCTATACTCTGAGCAGGTGtattatatttatgcatataaatgattatttctcTTCATTTGGAAGAGCATTTGTGTTAAACCTATTCCTGTGACGTCAGTGGCTCTCCTCTGAAGAGGTTGCACTGTACATGTACATAGGTGTGTATGTCTGTAAATGCTAAACAACTTAATTGAGATTATATTATAccattgtaaatattttattagaacTTTTATAGACCagttataaaacaaaaagacaaaaagtgaTAAAGATAACTGGTGAACATTTTGATAAAATAaactaagaagaagaagaagacaagaCTTGATGGCTACTGCAAAGATGGAGAACGTAGGTGCTGTTGTAATGGGGATCAGCAAGCAGAACGGGCAGCTCAGAGGACTGAGCTCTCAATCAGGATCCACCATTCAGAGCAATCCGTTTGCGAGAGTTTCTACTGGAGGCCAAAAACCTGCTGCAGACTCACAGGAAGGACCTGGAATCAGGTttggtgaagactggaaaaagagcCTGCAGCTTCCACCCAAAGACAAAAGAGTGAAAACTTCTGATGTGACGGCCACAAAGGGAAATGAGTTTGAAGACTACTGCTTAAAGAGGGAGTTACTCATGGGGATCTTTGAAATGGGGTGGGAGAAACCTTCCCCAGTCCAGGAGGAGAGCATCCCCATTGCTCTCTCTGGTCGTGACATCCTGGCTCGTGCCAAAAATGGGACAGGAAAGAGTGGAGCGTACCTGATTCCCATGCTGGAAAGGATAGACCTGAAGAAAGACTATATCCAGGcctTAGTAATGGTGCCCACTCGTGAGCTTGCACTACAGGTCAGCCAGATCAGCATTCAGCTCAGTAAGCATCTTGGTGGAGTCAAAGTCATGGCCACCACTGGCGGAACAAACCTACGAGATGACATCATGCGTCTGGATGAGATCGTGCATGTTGTCATAGCTACACCAGGCAGGATACTGGACTTGATCAAGAAGGGTGTAGCGAAAGTGGATAAAGTTCAAATTATGGTAATGGATGAGGCTGATAAGCTGCTCTCCCAGGACTTTGTAGTGCTCATTGAGGATATCATCAGCTTCCTGGACAAGAACAGGCAGATTTTGCTGTATTCCGCCACCTTTCCCATCACTGTGCAGAAATTCATGGCCAAGCATCTGAGGAAGCCCTATGAGATTAATCTGATGGAAGAGCTGACGCTGAAGGGCATCACGCAGTACTATGCCTATGTTACTGAGAGGCAGAAGGTGCACTGCCTCAACACACTCTTCTCcaggCTACAAATCAATCAGTCCATCATCTTCTGCAACTCAACACAGAGAGTGGAACTGCTGGCCAAGAAAATTACCCAACTGGGCTACTCCTGTTTCTACATCCATGCCAAGATGATGCAGgAGTACCGAAACCGTGTTTTCCATGACTTCAGAAATGGGTTGTGCAGAAATCTGGTCTGCACAGATTTGTTCACGAGAGGCATCGACATCCAGGCAGTGAACGTGGTCATCAACTTCGACTTTCCGAAGAATGCGGAGACGTATCTGCATCGCATCGGGCGCTCAGGGAGGTTTGGCCACCTGGGTCTGGCCATTAACTTAATCACAGCCGAGGATCGCTTCAACCTGAAAGCCATTGAGGACCAGCTGGTGACTGATATCAAGCCCATCCCCAGCAACATCGATAAAAGTCTGTACGTGGCCGAGTTCCACTCAACCAACGATGAGGCAGAGGAGCAGGAGACACAAGAAAACCCCTAAAGTACCACCAGAACTGGACAAGTCAGTGCCACGACGAAGCTGTGTGGAAATGGTgttgaatgaatggatgaattgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcatagcctaatattggtgaagtattttacattttcagttaGGCAGTATGAATCCCTGCGCAACGTTTCTTTCTTCCTCGTAGGATCTAAACGTAACATTATATATGCTGTCCTATCCTCAGGACAAACCTGGCTTTGCACAAATATCAGCTTttgcgtgcgcacacacacacacacacacacacacacacacacacacacacacacacacaccatttggGCCCTGAGTGTCCAGTGGTATCtttgtgtttactttttatttctaaaatttgTCAAGGATTGTATCACTGGCTGAGCCAAACATGTATTATGCTTTGCACCGGAAAAAAACCGACACATAAAGAACAAAATACATTCCAGAGTTCACTTCAGacttggatttaaaaaaaaaaaaaaaagtctactttGGATAGAGGAGTAAGGATTTGGCTTAAAACaaccttgttttaaaaaaagggcaCTGTCTGGAGTGGATATTTATCATAACTATTAAGATTTGAAGGGTTTCCCTATCAGCTGGATGAAACAAATAAGACAAGAATCTTATAAATACTGCAAAATGCTGCGTTTGCAAAGTTCGCTCAAGGAATATAAGCCTAAAGGCCACAACCTGCCAGATACAGAAGCATTTTTTTACTCACTAAAGTGCCTTACTCCATTAGATACAACAGTTTTGTTTCAGTTTATAGagattgtgtttaaaggcaTAGTGGTGCTACTTTAGAGTTAAAGATGCGTAGTTTCCTCATATGATCCATCATGCAAAGGGACAACATGATAAGGTGTTGGCATGTTCCTAGGCTATGGAGTAATATGGTAGATCTCAAGAATTACACAAaactgggggggaaaaaaacgatTTGGTGCTCAATTTGGTTGTGGAATATTGATTAGAAATCTGTGGCTCTAAATTATCTACAATTTTATAAAAGGCTCTGAAGGAAACTCATTCAGCGTTTTCATGCGTAGCTCATCATTGCAATAAGTCATGGCAGctaaaaatgagtgtgtgactgaagCCTTTTTAACGTTTCTATTGTTTTCtaattcaaaaaaaataaaccacattcCTAGCCTAAGTAGCTTAATACCATTTTTGTCTTGCTGCAGATCAAATTTTAATCCCACtaatgaaaagaataaaaaatattattagtgTGTGGTAAAGGGCAGGGgtctaaaacatcacacacacacaaacgtatGTGCACATTTGCAGGTCATTTTGAGTATTTTGAggtttattctctctttttaataGAAGACCTCTGTGtgcaaagcataaaatcatactCTATCGCTTTTGTTTGAGTCTGTAGccaggttaataataataataataataataataataataataataataataataataaccttgcTCTTTACTTTAACTGGGTATGAGTGAATgtataaaaaacatatttgttatAAATGAGTCAACAAATTTGCTTGAATGACTCTCCTAAATCTGTAGATTGAAGCGGATTTGTGGAATTTGAAAGCAAACTGTAGCATCTTTTAATATTGTGGCAGCTGTGATAATTTTCCGCTTAAAATACTCCTTGCCCCCCCCAACCCATTTCGCTTGAGACTCTTGCTAAGAAAGAAGTAGTAGTGTGTAGCGCTTATATAGCTTTTATAGCATTTAATGTAGAAACCTGAGTTTGTTTTAGGTTCCAGCTCTTAACCCCGAGCCTAGTTGGTGAAGCTGTTTGTTATGAATGCAACAGATAAAACTGCAATCAAATTGTTTGGAGTTCAGGACGTTTTCAGAAGTTTGTGCGAAATTGAATGCAGTTTGGGGAAAGCCTTTTTCAACTCTGGTGTAATTTGTTGtacctgatttaaaaaaaaaaaaaaaacaaccctgatATTAGTTCTCCTCATGCTCGTGTTCGTTTCTCCTCTCAGTGATAGTTTATCTTGTAACTGTAAAGGGGCAggtgttttcttttcctgtgggatctttcagagtgtgtgtgtgtgaatgtaaaatCTTGCTTCGTAGCTTACAGAAGAAAGAGTGTAAAGACGTGTCTCGGGGGATTTCTTTCAGCTGTTTGGTAAAATTGATGACACTGCCTTTCAGGACTTGAGCTAAAGCATAACCAAAaagtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgagactgtgtgtgaggaAAAGAGTACCTAAACTGTGAGATGAGATGTGTGCCTGTTTTGTGTACTTTATAGCTGGTGTCTATTTGTATGTATGTTGATACATTtgcagctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtctacgggtgaatgtatgtatgtatgtttgcatACATGTGCGTTCGTATGTAAAGTCCTCGGTGTGCTTCTCGCAGAGATGGCGTTCGAAGTAATTGCTGGCAAAACAAAATTATACATGCTGCGTCTGTGATTGGAGCATTCAGCCAAAACGAAACCAGCGGGAGTATTCCAGCTTGTAAGATTGTCAAAGTTTTGGCTTCTCACAACAAGCCTCATTACGCTGACAGTATACCGAGGCGTTGCCACGTTCAATCccaaatgttagtattagtaAACACAATTAGGGCTTTACATAAAGTTAACAGTCAAAATCTGAGCCAATAacttcacaaataaatatttctgttgtTGCAAATGAATTGTAATATGCACAGTGATGATTGCAAAAGTGTTTTGAAAGTGTTTTGTCCTTTAGTTCTTAGTTTTGAGGCACAATAGAAGAGAACGCACTGTCTACAAAGTGTCTAACACAGTGAATCAACTAAACACTGaatttactggaaaataataataattttaaaaatcctgtcatgTTCACTAATATACGATGGCATTTtagggccactgtttaaaaaaaaatgttttgagaaatataatgtaatattatgaGAAAAGTTGAAATGTTTCAAGAATAAAGGtgtaatatttcaataaaaaggTCATAATACTATGAGGAAAAAAGTCGCTGTATTTTGAGAATGAGGTCATAATACTATGACAGAATGAtgcaatgaaaataaagaaatactttACAAATGAAGAAATGCTTAATCTTCTGGCAGATCAGCACCAgataattattagtattagagcTTTGAAAGaaattttgtttctttagaaGGAAGAACCACAAGAACTTGGAGGAAATTGTGTCTCTTGTTGAAGGAGAAATGGCAGGCAGCGGCTCTCAAGGCTATTGGTGGTTACATCTGCAGCGTAACAGGTACAATGCCGGCGTTCTCAGTACAGCAGTTTAACCCCGATGTCTTATGGCTTATAACTCTCTATCAGTTTATCTTTCGAGTCCATACGCCATAACGTGTTGGGGACACGGAGCGTGACAGAGTTCCACTCCTTCAGGATCGATCGTTCTGATTAACATTCATCTACACACCCTCTTTGAACAGCACGCAGATGTAACCATTGATAGCCTTGATTTCTCCTCCAACAATAGAAATGATAGCTTCAACAAATCCTCAGCATccctcattttaatacataaacTCCATATGTAGCATTTTATAATagtattatgacttttttcttgaaatattgctgcttatttcttttaatattatgacttatgacttttttctctcaaagcATTGCAACTTTTTCTCCTGAAatttttattcttgaaatattactAACTTGTTctcaaaatattacttttactttattttccaaacattacaaatttattctcataatatttttttctcaaaatattcaACCTTATTTTTGaaatcaagttttttttaattttttttttattttggcccTAAAACACTGTCGTACTAATACGCCTTTAAAAAGAACTGTTCTATTTTTCTAAACCACCTCGAGCATTCTGTTTTAGACAATCTGACCAGcatgtttgtttacttttggttctttaaaaaatgttttcagcttAAGTGGAAGGGGCATGGACAATTCTGGAGTTTGGTGGGTtcctatttttttgtttttttgttttttttttgttttgttttgttttgttagagCTCAGCTGTAGACATTGTATTGcaggtaaatttaaaaaaaaacaagcctatCTACAGCAGTGAATCAACAGAAATGTATGGGGCAAAAATCTTagcattactttttttttttttttgcctgtacACACATTGCAGAAGCTCAGAATTCGttctgtcaattttttttttctccagtgttCTTTTCAAGCTGCCTCAGCACTGAGTGAGAGATGGTGAGCTTTGTTCATGGAAACTGAATTCGGCTGAAGGGGTGGTTTTGTTATGGAAAAATAGTTAGTGTCCAAAGCATGAATATCCTCAGGGCCAATTTTCGAAGGATGAATGATCCACTGAGTTCCAAGATGAAATACACCCTGAAATATTGGCATTGTTTCAGTGATGTATTCCAGGCACATCTTCCATCTGATCCAGAGGAACAGATACATCTACGGAAAAATTCTATACTAGCTAAACGtcactgatgtcttttttttgttgttgttgtacagAATACAACCAGAAACAGGAATTCGGTATAAggataatgtttataataatgtttgttGATTGGCTCAGAGCTTATCAAACCAAGATTCTTGTGAAcactgtctctccctctctctctctgatttgcTGTGTCTTAAAGTAAGCTAAACTCAAGCAGGGGATGTGTTTggaaaaaataaactattacCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479573 lncRNA downstream 23127 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 54388 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 78786 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 148362 11691704 ~ 11696191 (-) False G403981
TU479303 lncRNA downstream 163557 11679255 ~ 11680996 (-) True G403982
TU479616 lncRNA upstream 106975 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 133303 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 136499 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 261690 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 282316 12146083 ~ 12147663 (-) False grin2da
XM_026928288.2 mRNA downstream 1608 11832206 ~ 11842945 (-) True tomm40l
XM_034301426.1 mRNA downstream 1944 11832206 ~ 11842609 (-) False tomm40l
XM_034301427.1 mRNA downstream 34772 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA downstream 43815 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA downstream 43826 11799496 ~ 11800727 (-) False LOC113543858
XM_026928241.2 mRNA upstream 3865 11867632 ~ 11882509 (-) True lipea
XM_034301695.1 mRNA upstream 47904 11911671 ~ 11938421 (-) False ago3b
XM_034301694.1 mRNA upstream 47904 11911671 ~ 11938421 (-) True ago3b
XM_034301735.1 mRNA upstream 119427 11983194 ~ 11995992 (-) True usf2
XM_026928346.2 mRNA upstream 137249 12001016 ~ 12004480 (-) True LOC113535156
trnay-gua_21 other downstream 20590 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 22089 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 23589 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 25082 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 26579 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 567228 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 706697 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 707826 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 709832 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 710973 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile