RNA id: XM_026928221.2


Basic Information

Item Value
RNA id XM_026928221.2
length 8527
RNA type mRNA
GC content 0.52
exon number 21
gene id cica
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14931143 ~ 14964811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGCCCGAGCCATAAGCGGCTATACTTTCCCCTCATTTGGAGTGGCTTTGCGGAAGAAAAGCGTTTTTACCGTTTAAACCTGCGCGAAGATTCGGTATTCTTATCCATTTTGTTTTCCAATCAATATTTATTTGATCGACACTGTTAATATTGAAAGGGGttgaatttccaaaaaaaaatgggaCACAGCAGGAATAAGAAGAGAGAAGGggcagaatgaaagagagaaacagagtgcaAGATATTGATAGGCTGGAACATATAAGGAAACTTATGGACTAAACATTATTGAATATGAAGCCCTTTAAAAAACAAGGCAGACGGTCACCTCCATCCACACGAGCCAAAGGGAGTAAGAGAAGGGGGCTGACTGATGCAAGCccagaagaggagaagagggaCACAGAGGAAAAACCCAGGCTCTCACCCTCCTCTCCCAAGAGATTGATATCCTCAAATTCTGACTCATCACAGGATGAGCTAGTTAGAACCATCAGGAccccagagagagagggaaaaagagaaggaCTACTAGATGTATCAGGGGATTATGGGAAGGGAAAGGAGCATTCTCGGAGCTTCAAGTCAGGTGGAACACAGAGCGACAGTAACAGCCCCAATCCCTCATCCAGCCGCAAGACAGCCACCTTTAAGGCCCGCGTGCCGAAGAAAAAGTATACCTCTGAGCACTATGCTGGAAACCATGGCAATGATGGAAATTCCAGTACTCCCCCACAGAGTAACAGCAGCACACCTCACAATTGCTCCAGTGCTAGTCAGGGCAGCACCACTGGAGCTGAATACACAGATACAGTCAGTCAGAGCAACCAGGTACCTGTTGCCAGCACCTCAGGGGTCATACAGACCAGCATGGCAGCACAGTCAAACAGAGTGGGAGATGAGaatagtgagagagaaaagataaaCACGTCTAGTCCTCAGCGCTGCTCCTCCACAGACACAGCCAGTGAGCACTCAGCTGACCTTGAGGTGTCGACACAGCAATCTGGATCCCACTCCAGTGTTCAAGGAGGCCAATCTCATGTTAGCCCTGAGCCTTCACAGGAAAACCTACCAGCTGGGCTGTCACAAACGCTTGCTAAGGGTTTAAAGAACCAGAGGGTCCTGGCCAGAGTGAGCACAAGAAGAGGGGACAGGTGGCCACCTGATAGAGGACGAGAGTCATCAGGAATTTTTCGTGCTGGTGTTGTACGAGAAGTCAGTGGAGAGCATGGAAGTGTGGAGGTGCAGTTTCATGGAGAGGAAACAATATGCAAATACCCATTCCGAGTGGTTACTGATATGGTAGACGTGGTATTGGATGCACCCCCTCCGGGGCATGCATCTGTGCCCATAGGAACACGCGTGTGTGTGCCCTTTGGAGGTGGCAGTGAAGGGAGCGAGGGGGCACAACAGTGGTACAGAGAAGGCCTGATCACCCAGGTGGACCCTCACCCTGCTGTTTCTTTCCCTTATCGTGTCCAGCTCCAAAAGGATCCAGCAGATGAAAAGGATAGAACTGGACCAGAGGAGGACTGGAGGGAAAAAACTGCTCAAGCAGTGTGGGTCTCACGGCAGAGTCTCCGCCTTCTGGTTCCACCATGGGACCTGGAGCTGCCTCAGCCTACTGACCGAGGGAAGGAAGGTCGAAGGgtgggggaaagagagagggagtgggAGGATAAAGAGGAGATGGAAGTGGAATCAGAGTTGTGTCGTTTCAGCATGGTGCATGGGGTAACAGGGCCAGTCTTAGTTACAGGACTGATACACCCTGAAACTTCTTCATTACCACTCTCTTCATCTTGTTCAATTAGCACTGCCATCACTTCTGTACTCAGCATAGCTCCAGACAGAGCTTGGGAATGCAGCCGACAAAAAGAgctggagaaagagagggagttGCAAAGGCAATCTGAAAAAGAACGAGAAAGGGAAAGGATTTCTTTACAAGCACCAGCCCCAGAAGAGGACATGGAGGTCAGCCATTTCAGCATGGCTCCACTCAGGGAGGGTGGCCTCACTTTAGCCATGGGCACCAAAACTTCGGGCGTGCCCTCCCAACATCGACCCATTCTCTCCAAGCCTGACTACCTCAGCCCTCATCTGTCAGTGGTGAGAGGCATAGGCACAACATTAGCACCCCACTTATCCCTTGGCCCCTCCTCTGTACTGCTGGGAATGGATGCAGCTGCAGGGGCTGCAGTCATCTCTTCTACCCCACAGTTGCCTCCACTGCCTCCCTCCTCTTCTCGCAGCTCTCTGGAGAAAACATCCACTTCCAGCTCCCATGGTACATCAGGGGGAGGCTCAAgctcatcttcttcatcacgTTCTCGTACACCTCTCACAGCTGCTCAGCAGAAGTATAAGAAGGGGGATGTGGTATGTACTCCCACAGGAATCCGAAAAAAGTTTAATGGGAAGCAGTGGCGGCGACTGTGTTCCCGTGAGGGCTGCTCTAAGGAGTCCCAGCGACGTGGCTACTGCTCCCGTCATCTGTCTATGCGTACTAAAGAGATGGAGGCAGGAGGCAGTTTGGGCAGAGACAGAAGTGGTGCCAGCAGTACAGGCACCCTCACACCTGATCTCCGCCTAGGAGGTCGTACCAGCAGTGAGATTGACTGGGATGAGACATCACATGACAGTAGTGAAGCCAGCAGTCGTGGAGGAGACTCGCGTCCTCGTCTAATTTTGCCTTCCCTCCTACCGCAAGAGCTGCCGCGTGATTTGTCACGCTTTGACTTTGATGAGTGTGAGGCAGCAAACATGTTGGTGTCTCTGGGCAGCTCACGCTCAGGCACTCCCTCATTTTCCCCTGTGTCCAATCAGTCACCATTCTCCCCTGCTCCATCTCCTTCACCATCTCCACTCTTTGGTTTTCGCCCAGCCAATTTCAGCCCCATCACTGCACCTTCATCTCTCACCCCTCGACGTCCACGCCATCTCAGTGGTACCAAGCTGGGTACCCCCAGTGCAGAGCGGGATCGCCACCTATCTGGTATTATGCCCACTTTTCAGACCAACCTGACCTTTACTGTGCCTATGAGTCCCAGCAAGCGTAAGTTGGATGCTCCGCCACCCCCACTTCCTGTTGCACCTGATTATACTAAGTCTGATCCCCAACTAAGTGACTTGCCACTGGGTCTCAATCCTGCAGCCTTCAGAGCAGTATCACCTCAAAGCCAGTCAAACACaccttcttctctttcctttacTCGACCAAGGAGTACAACTAGTCGTCCCTCATCTTCTGCTGCATCCACCCCTCCACCGATGTTGGTTTCTCCTACACCTCCCTCACCACTGCCCCAGGACCCCAGTTCGCGCCGTATTGTTCCCCTGCGTGATTCACCCGTAATTGTCCGCAATCCTGATGTGCCACTGGCAAAATTCAGTGAGGGTCCCTTGAACAGAAGAACAGGTTCCCGCTCTAGAGAGCATAGTCAACCACCTCACCTTTCTGTGGGTCTCCAGGCTCCTATTCCCATTAACAGAGCTGCCACAAATGGTACAGTACTGCTCCGGAACTCTGCCCCCACCTTGGTGCTGGTAACCTCTGCTCAGTCACTAACTACTGCAGCAGCTGGTCATCAAACATACTCAAGCCAGAGCCCCAGCTGTGTTTCTTCTTCCAGTATAGCCACTGGTCCTGCCAGTTCAGGCTCTGGAGGGAGAGGGCAAGACAGAAAGCCAGGTGATCATGCAGATGTACAAGGAGGGATTTTACCACAACCTGTGGCCTGCCATCCAAGTCCCACTGCCCTACTGCCTCTCATTCTTCCAGCAGAGTCTCCGCATCCTGCCCCTCGCAAAGACATTATAATGGGACGACCTGGCACAGTCTGGACTAATGTGGAGCCTCGCTCAGTGCAAGTGTTTCCCTGGCATTCACTGGTTCCTTTCCTGGAGACCAGCCAATCAAATTCATCCAACCATCCTACAGATAGTCAAACACAGAGCAAAGAGCCACAATGTGGAGTAGCTCTCATGACTGATGACCAATCAGTTGCTGAAAGAGCATCGCCCTCCTGCCCACCGTCCTCTGTAGGTGATCCTCcagcagagagaggaggagataGTGAGACGGAGAGTGATGCTGATGatctCTTTTACTCAGGTGGAGCCCAAGATCCTGCCGCACTGACTGGTCCAGTGAAGAGACGGACACAATCACTCAGCGCTCTGCCCAAAGACAGTGACAAGAAGagagagaaggaccaCATACGCCGGCCAATGAATGCATTCATGATCTTCAGCAAGCGTCATCGTGCTCTGGTGCACCAGAGGCACCCAAACCAGGACAATCGCACGGTCAGTAAGATCCTGGGTGAGTGGTGGTATGCTCTAGGTGCCAAGGAGAAGCAGAAGTACCACGACCTTGCCTTCCAGGTTAAGGAGGCTCATTTCAGGGCTCACCCTGACTGGAAATGGTGTAATAAGGACAGGAGGAAGTCTTTGTCTGAGGGCAGAGGCACTCCAGGAGCTAAAGAAACTCGAGAACGAAGTGCTTCTGAAAGCACAGAGACCCAGTCAATTTCTCAGCGGGGTGAGCAAAAGGGAGCAGGGCCTAGCTGGATGTCGCCAGAGTCCGAAAACTGGGGAGGGCCGGGAGGAGGCCAGCAGACACGGCCTCGTGCTTTGTCCCAGAGTGCAGCGAATAGCCcggagagaagagagggagaaaaggaTCAAGAAAAGAATGGAGTAAGTTCATTTCAGACTTGCCCCCCTCCTGTCTCACAGCGTGGGACTAGTGAGGATGTAACTAGTGATGAAGAGCCAATGGTCATCTGTGAGGAAGAAGGAGACGATGATGTCATAGGTGATTCATTTCCAGAGGGCTCAATAGACCTTAAGTGCAAAGAGAGGGTGACAGACAGTGATGAAGAGAATGACCCTGCAGATGAAATCGATGGCAAGCGAGTGGTTCGTTCCCTCTTGCTCTCATCTCCTGGAGGCGAATCggcaaaaaaagagacagaaggcaagagagagagtgcagagaGTATGATAAAGCAGGAGACAGAGGCTGGAGAACTGTGTGAAGGAATAAAAGAAGGAAAGGGAGGAGGCGGAGGAATGGGAGATGGAGGAGCAGGCCAGGTCCCTAAATGTTTTAGCCTAAATGGCACGCTCTCATCTGAAGCAAAAGAATTACAGGTGCCAGGGACGGTCCGAACAGCCCCCACGGTAGTAACAAATGTGGATAGACCTGTAACCAGTGCCCCCATTGCAATAGCCAGCAAGCCTGCTGAAGGGGGCATGCCTCTTGGGGCTCCATCCCCTGATGGGAAGCCCAAGCTTCTGATTGGTGGAGGAGGGGCAGCAGGAAGTGGGGCCATTGCAGGGGGTGGGTACTTTCCTGCGTCCTCTCCCAAACCTGTTGGGCAAGGAGGTTTAGTCACAGGTTTAGTACTTGGAGGAGCGTTCCCAAACCCACCCACTGTTCAGCTCATAACCCCGCCCCAACCCTTGCCAGGCCCCACCACAAGTAACGGAGCACCTAACAACAGCGCCGTGCCTCTCCCTCTGCTTCAGCCTCAGTTCCTCCCAGGAGCTTCACTCACTCCCCCTACCAATGGCAAACAAGTCACCCAGGTGCAGTACATCCTTCCAACTCTACCAGCAACAGCCACCCTAAACAGCCCCTCTCCGCAGCAGACCCACCAGTCAGCCGGTGTTCTTGCCCTGCCCTCTGCCCTGCCTGCACACTTATCATTGTCAAACGGATTGCATGCAGGGGCTGGGCCAGGGATGAGATATGCCTCAGTGCCAGCAGTGGGAGGGGTCAGCCCAGGAGGAAGAGCACGGTCTCCAGTCTTACAAAACAAGATGCTGGTTCCCATGACAACAGTAAGACCAGGATCAACACCTCCACAGCCCATTTCCCTAGTGGCCCAGCCTCTTCCTGTTCAAAATGGGGTGCAACCTGGAAGTAAGCTCATTCAGATTGCCCCAATGCCAGTGGTCCAAACTAATGTCCAGCCTGCACGAACAGTACATCCTTCTGCTGCCTCCTTCCCAGTCTCTGTGGCAACAGCAACTGTCATGGCCTCGGGTGGCACATCTCCTCAGACAGTGCTATTGACTCCATCTGCTACAAGGATTACATATGTTCAATCAACCACCGGTGTCACTACCCCTTTGTCATTGGGGTCCACAACAGCAGTCTCCACCCCTCAGCGGGCAGCGCCCCCTCACACACAAGCATTTTTGCCATCTGCTATGGCCACACTGGGCTTCACCGCCATTGCGCCTGCTGGTCCTACGCTGGTGCATCCAATAGTGGCAGGCCAGCCTCCACTCCTGGCTCAGGTTCCCTCCCCCAGCTGTTTGCCCCAGTCCTCAGCCTCAGAGTCCAGTCGACAGCTAGTGACTGCTCTTTACCCTGGCCCAAGTGTCACCCTGGCGACAGGAGTGGTTTCTATGACAACCACATCTCAAAATGTGACTAGTCCTCTGTCAGTTCTGACATCCCCCTCATCACCTCATATGAAGACATCTATAGCATCGAACGTGCACTTGCATTCTCAGACCTACACAGACTCACCATCACAAGTCACTTTGAAGATGGAAAGTCTTAAAAGGccagaggcagatacacacagagaagcAGTGTTGTCAAACACATCAAGTCAGATGGAAGAAGTAGGACAGCTTGCTAGCCCAACCCCACACCTGCATTCAGGAAGTAGGGCAGGATCCCCCAAACTGCCCCTGAGCCCTCAGAAGATCAAAGTTCAAGTTGAGTATCCTCCATCAAGGCAAGAAGGGGAAGAGCAAGATGGAAAGAAGGCAAGCAGAACGGAGCGTGACAGTGAGCAAGACGGTGGAGGAATGGGGTCTACTTGGATAGAGaaagcagtgagagagaggggaatAGAAGGAGCCCCCAAAAGCCCGTTAACTAATAACAAGGAGGAACATGGCAGAGAGGCTGGACAAAAAGAGGTGTGTGGTTTGGACCTGCCTCCTCCACCAACGCAAAGTGACACTCCAGCACTCAAGAAGAACAAATCCCGCCCCCCTCCACTCAAAAGCACCACTGGCTCTGTGGACAAAGTGATGTCAGACACATATTTTGAGGAGCGCCTAGCTGAGCTGCCAGAGTTTAAGCCAGATGACGCATTGCCCTCCCCCAACTTGCAAAATCTAGCCACATCTCCCCGGGCAATACTCGGCAGCTACCGCAAGAAGAGGAATTCAACAgATTTGGACTCTGTTGATGATCCCAGCTCTCCAAGGAGGAAGAGTCGTCGCTTATCGAGTTGTAGCTCAGAACCCAACACACCTAAGAGTGCTGCCAAGTGTGAGGGAGACATATTCACCTTTGACAGAACTGcaggagagacagaggacaTTTTAGGTGAGCTGGACCGTGTACCATATTCTCTACGCCGCACACTGGATCAGCGCCGGGCACTGGTCATGCAACTCTTTCAGGAGCAAGGCTCCTTCTTCCCGTCAGCCCAGGCCACAGTTGCTTTCCAGGCCCGCTACTCTGATACTTTCCCCACTAAAGTGTGTTTGCAGCTGAAGATTCGTGAAGTGAGGCAGAAGATCATGCAGACTGCCACACCCGGTAGTTCAGAGGCCACAGGGACGGGAGGAGCTTTCAGTGGCTCAGATTCTGCTTGTGCACCGGGACCATCCAATCCTGTAACCAGTGAAGATGGTGTGGCCGAGGTAGACGAAAAGGGCTGCGAGTGGGAAAAGCCCAAGACTGGCATGGATGAATCACAGGATCTTAGATGAAAACTGAGAGAAAGGATAGACATGTTAGAATGTGGGAATGGGCAGTAGGCAGATTTAACCAAGTCCACTGACAATATACAGCACTTGCATGGTTTTTGTTGAATTTATAACCAACTGTGTGAATTTTGTTCCGCTTGTTTTCACatcattattttcctgtcagTGGACATTATCTGTGTCAAGGTGACCATTCACACAGACTGACcaacacatatatattttatgcaaGTACACAAAATTAACTTTCATAACAGGCACAAGCACCTTTTCAACAAAACATCCGGCAGCACGCAAATGAGTGCACCAGGTAGTTGTTCCGTCACTTGCTTTAGATCTGGAGCCCCTTACTGTGGCACCTAAGACAGCATTCTGCACAAAGTTTCTTTGCCTGGCATAAAAAATGAGACTGTTTGGAGGAAATTGGTGGGAAATGAGCGCGTTTGCACTTTGAtatgtgagagactgagacagaacCGTGTGGCCAGAGAGGAAGAGGTGTCTTTGTGCAATGGAACACGTCCAGTTTGTGGGGAAACAGGCTCAGAACCAAACCTTCCAAAAGCAACAAACTGAAGACTTTCTCACTTGCAGCTGAGCAGAAAGCAAAAGCTATAGTGACTGCCAAAACAGCACAACAACAAAGAAACCAACACAGAACACATAAACCAAGAGAGCAGTGTGCATCTTCTCAAATGGAACATTAGcatgaataatgaaaaaaaaacacacactctctctcactctatgaATACATGCTTCTTCATTTG

Function

GO: NA

KEGG:

id description
K20225 CIC; capicua transcriptional repressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481572 lncRNA downstream 124284 14805181 ~ 14806859 (-) True G405924
TU481579 lncRNA downstream 177851 14749754 ~ 14753292 (-) True G405930
TU481577 lncRNA downstream 182696 14746848 ~ 14748447 (-) True G405929
TU481557 lncRNA downstream 210237 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA downstream 226831 14700268 ~ 14704312 (-) True G405917
TU481627 lncRNA upstream 53875 15018686 ~ 15019240 (-) True G405967
TU481636 lncRNA upstream 83910 15048721 ~ 15049178 (-) True G405976
TU481641 lncRNA upstream 86878 15051689 ~ 15051897 (-) True G405981
TU481642 lncRNA upstream 87144 15051955 ~ 15052188 (-) True G405982
TU481643 lncRNA upstream 87776 15052587 ~ 15052844 (-) True G405983
XM_026928434.2 mRNA downstream 13226 14897610 ~ 14917917 (-) True si:ch211-264f5.6
XM_026928308.2 mRNA downstream 63545 14860254 ~ 14867598 (-) True gnb3b
XM_026928369.2 mRNA downstream 261103 14652344 ~ 14670040 (-) True daxx
XM_034301734.1 mRNA downstream 293810 14622681 ~ 14637333 (-) True ctdp1
XM_026928370.2 mRNA downstream 316382 14598495 ~ 14614761 (-) True zbtb22b
XM_034301470.1 mRNA upstream 108858 15073669 ~ 15136790 (-) False LOC113534955
XM_034301471.1 mRNA upstream 108858 15073669 ~ 15136752 (-) False LOC113534955
XM_034301469.1 mRNA upstream 108858 15073669 ~ 15136752 (-) True LOC113534955
XM_026927874.2 mRNA upstream 200377 15165188 ~ 15206951 (-) True atp1a3a
trnat-ugu_15 other downstream 384965 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 387854 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 811485 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 847297 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 1169588 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 2665 14967476 ~ 15013988 (-) True G405961

Expression Profile