RNA id: XM_026928254.2


Basic Information

Item Value
RNA id XM_026928254.2
length 2254
RNA type mRNA
GC content 0.46
exon number 10
gene id clk2a
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12795731 ~ 12813429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGCGCGACCCTTCCACCAGTTATGACTACCGCCGCGCGCACCAACGCCACAAAGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCCCATCCTCCTCGATGAAATTGTCAGCACTTTGGGGGAGGGCACGTTTGGAAGGGTGATGGAATGCATTGACCATCGCAGaGGTGGAGCCCATGTGGCTctgaaaatcattaaaaacGTTGAGAAGTACAAGGAGGCTGCGCGACTGGAGATCAATGTACTGGAAAGGATCAATGAGCGAGACCCTGAAAACAAAAATCTGTGTGTACGGATGTTCGACTGGTTTGACTATCATGGCCACATGTGTCTCAGCTTTGAGCTGTTAGCACTCAGCACGTTTGACTTCCTGAAGGAGAACAACTACCTGCCCTATTCCATCAGCCAGGTCCGACACATGGCCTACCAGCTCTGCCTAGCTGTCAAGTTTCTGCATGACAACAAGCTGACCCACACAGATTTAAAACCAGAGAATATTCTCTTTGTTAACTCGGACTTCACCATAACATACAACGTAGAGAAGAAGAGAGATGAGCGTACGGTGAAGAGCACTGCAGTGAGGGTAGTCGATTTCGGCAGTGCTACGTTTGACCACGAACACCACAGTACAATCGTCTCCACCAGGCACTACCGCGCACCGGAGGTTATTCTCGAACTGGGTTGGAGCCAGCCTTGTGATGTGTGGAGTATCGGCTGCATCCTCTTCGAGTATTACCTTGGCTTTACGCTTTTTCAGACTCATGATAACAGGGAGCACTTAGCCATGATGGAGAGAATATTGGGTCCCGTCCCTTCCAGGATGATCCGCAAAACGAGAAAGCAGAAGTACTTTTACCATGGACGGCTCGACTGGGATGAAAACTCCTCAGCAGGAAGATATGTTCGAGAGAACTGCAAGCCCTTGCGACGGTACATCCTGTCTGAGGCAGAGGAGCATCACCAGCTGTTTGACCTGATTGAGGTGATGCTGGAGTACGAGCCGCCAAAGCGCATCACTCTGGCCGCAGCGCTCAGGCACCAGTTCTTCCAGAGTCCCATCACTGCTAGCGAGCAGACATCAGGAAAGCCCTGGGAGGCTAATCGTGACATTAGCCGGTGACGTTTGTCTCTACCTGCCTTAGTTTTTTTgcgccaaaaaaataaaaaaaaactcttcacgTTTTTGAGGGGCTGTGAGCAGAGTTGGTGTGCAACAACAATTGGGGTTCACCTGGTGAAACTgatccttttttattttcaggcaACCTGACTGACCAAGTAGTTTTAAGGTGGACCGAGTTGTAGGGGTTATACTGCCGTGTCAGCTTTAAAGTATTTAAGGGTGACACAGGACTTTGTCTTAAGCTGGAACCGGTTACAATAGTTTCGTATTTACAGAGCCCATGGGTAGATTATGTACCGTAGGATGCCATTTCAACGCTAACTCAGACACAAAGTCTTCCACACATGAAGGACAAGATGGAAGGAACTTTATCCAGTACTGCAGACACAAAGTACATGGAAAAGTTTAAAAGATCTGATGTGTTGTTGCATATATAACCATCTCTGATTttgaaatggggaaaaatggagAGAACATCTTTGAGTCATATCTGTTgtagcaaaaccaaaacaaggtgggttttttgttttctagaaGCTTTGGAAAAACATGAACGTAAACATGAAGAAAAGCACCAAACTGGCTGCATTGGTTGCATTGGATTCCATTGTAATTGGACACTGAGTCTGAATTACGGTCACGTACTTAGTCGTATTTTTATTGGACAGGCGATAATTGAAGAGATGTTCTGGCATAGACTCACTCCTTGATCCTAGATCTGTCAGTCTCATCCGAACAGCAGCTACACAGAAGCTACTGTTCTATGTAGCTcagtgtctttttctttttttcagtgtgtctgacacacacatacacacacacacacacacacacacacacatttgtattttCTATTGAAGCCTTTTGTCCATGTAATTAAGCACAGACCTTTTGTGCGCTGTGTCATTCTTGCCAGCACaggtttacagtatttatttgaatcagcattatttttgttttcgtGTTTTTATATGAAGCTAAatgtgtatatctgtatatacaaatatatatgtatctatGACTGTATAGAATAaagtctctgtctgtctgcctggcGTTTGTTGAAGTCGTGGCAGCTTCACAGGCAGAAAACGGCAGACATCTTGTCAGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480163 lncRNA downstream 109263 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 118085 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 160518 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 204198 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 216925 12576532 ~ 12578806 (-) True G404682
TU480264 lncRNA upstream 9938 12817584 ~ 12877390 (-) True G404799
TU480265 lncRNA upstream 67165 12874811 ~ 12942105 (-) False G404799
TU480293 lncRNA upstream 106295 12913941 ~ 12923945 (-) True G404818
TU480384 lncRNA upstream 176067 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 184555 12992201 ~ 12993258 (-) True G404900
XM_034301685.1 mRNA downstream 2416 12790796 ~ 12793315 (-) True si:ch211-81a5.8
XM_026928544.2 mRNA downstream 11865 12771921 ~ 12783866 (-) True hcn3
XM_026928395.2 mRNA downstream 25050 12761791 ~ 12770681 (-) False ndufv1
XM_026928396.2 mRNA downstream 25142 12761712 ~ 12770589 (-) True ndufv1
XM_034301472.1 mRNA downstream 71216 12687762 ~ 12724515 (-) True kmt2ba
XM_026928313.2 mRNA upstream 8425 12816071 ~ 12835472 (-) True setdb1a
XM_026928314.2 mRNA upstream 8425 12816071 ~ 12835471 (-) False setdb1a
XM_034301515.1 mRNA upstream 30558 12838204 ~ 12855492 (-) False lrrc71
XM_034301516.1 mRNA upstream 30558 12838204 ~ 12855492 (-) False lrrc71
XM_026928427.2 mRNA upstream 30558 12838204 ~ 12855492 (-) True lrrc71
trnav-cac_26 other downstream 216080 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 216930 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 218071 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 218927 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 220916 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 333048 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 582318 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 748510 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 952115 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 952115 13759761 ~ 13761555 (-) True s100a11

Expression Profile