RNA id: XM_026928261.2


Basic Information

Item Value
RNA id XM_026928261.2
length 1710
RNA type mRNA
GC content 0.47
exon number 8
gene id oxnad1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13925835 ~ 14000665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGATAACTACTTCCGGTTCACGGCTGTGTTTCCTAAGAGCACGACAGAGGTTAAATAGCCATGCTTTAACACAGTCACTGAAGACTACAAATATACTGAATGCGGATTACGTTGTGAATATATGTTTTCGGGGTTGGTATTATTTTTAGATTACCAGGAGATATTTTTGGATAGTAAAACGTGAGAAATTTAGAAGGCAAAGTAGACTAAGCAGCGCAGCCAATACACATTATCAGGCTGTAGAGAACCTGCCGGTCTGATCCATTAGTTTCCATATGTTTTACTTGCACAGTAACTTCCTAGTGCAAACTCCAGCTCCAGCGCAATGAGCCTGCGGTGTGTTTTAATTACTGCTCGGTGTTTTGCTGGTGCTTCGCGGTCACTACGAGCCACATCTAACCTATTATGTTCATCGAGaaaCATGTCATCACGACAAGCTGATCACCTTGAAAGGACAGCTAGTGTTCACAGACAGAAGgccaCGTTCTCAGCACGAGTTTGTGCCATTACAAATGAGTCAGACACAGTGAAGAGGCTGCAGCTGGAGGTGCCGCATCCTGAATTTAGTTTCCGTGCTGGCCAGTGGGTGGACTTTTTCATCCCAGGAATGGAGAAAGTGGGTGGCTTTTCCGTGTGCTCCAGCCCTGACCTTCTGCACAGAGAACAAGTTATAGAACTGGCAGTGAAATACACACAGCACCCACCTGCACACTGGATACACACCAAGTGTACGTTAGGCTCACAAGTGGAAGTGCGAGTCGGGGGGGATTTTTATTTCGACCCCATGCCATCTGATCATACTGTGGACCTGCTTTTGGTGGCTGGTGGCGTTGGTATCAACCCCCTTTACTCCATCCTAATGCATGCTGTAGATCTTCTCCGACTGCCACACGCATACacaccaggacacacacacctctgttacAGTGCCAAGAACACAAAGGAGTTGCTGTTcaaaaacagCATCACTGGTATTTGTCGGGAATTTCCAGATAAATTCTCTTGCGACTTCCTAGTGACGCGACAAGATTTTGAAATCGAGCCGGGCCTCCAGTCATACACAACCAGTGGAAAAATATCACAGGAGGTGCTGAGGCGTCATGTTAACCCTGGGCGCACATTATGTTATTTGTGTGGGCCGCCACCCATGATTGAGAGTTGATGGCATCTCAACGTTGCGTGCAAACACAGCTTCTGCACGAAATGGATGGCCGAGCAAAAGGTTCCGCTTGCCAAATCTCTGAGGAAGTGTGGCTGAAGGTGGACTCTCAGTTCGGCGGCACATTGTACACTGCAGACCAGAGATAGGCTTGGTGTTTCCTGAGCGACCAAACCTCTGCGGTAGGTTGATGGAAGTCTTGGGCATCCTTTGCATGTGTGCGGAGTCACGGCCAAAGCGGAGAGGCAGGTTGGCATGAGCATGCGCTGATTTTGCCAAGAGTGGGTGTAGGCGAAGGATGGTAGGCGAGTTTACTCTGCCACTGCTGCTTGGAGCCATGCTCAGTGTGGCGTCCTCCATTTCCAGACTTCGGGGAAGATCTTCATTGCTCTTTAAAGAAGTGAAAAGGGTTACATTTTGCTACAAAACAagcatgttttacatttataactgtaaaaattgtgttttaacAGTGGTATGCCTTAAATTACACTACATGAGACTGCTGTAAAGAACACCACAAATATCATTAAAACACTGTACATTTCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480986 lncRNA downstream 97168 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 99841 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 129763 13815898 ~ 13839833 (-) True G405420
TU480985 lncRNA downstream 154704 13808483 ~ 13814892 (-) True G405419
TU480934 lncRNA downstream 233848 13735536 ~ 13735748 (-) True G405386
TU481157 lncRNA upstream 76775 14076442 ~ 14077150 (-) True G405575
XR_004577551.1 lncRNA upstream 183819 14183486 ~ 14191755 (-) True LOC117596429
TU481288 lncRNA upstream 256857 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 305272 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 314072 14313739 ~ 14314834 (-) True G405701
XM_026928451.2 mRNA downstream 165008 13782962 ~ 13804588 (-) True LOC113535216
XM_026928448.2 mRNA downstream 198063 13761655 ~ 13771533 (-) False pbxip1a
XM_026928449.2 mRNA downstream 198063 13761655 ~ 13771533 (-) True pbxip1a
XM_034301496.1 mRNA downstream 198064 13761655 ~ 13771532 (-) False pbxip1a
XM_026927989.2 mRNA downstream 208039 13760165 ~ 13761557 (-) False s100a11
XM_034301598.1 mRNA upstream 17021 14016688 ~ 14046043 (-) False igf2bp3
XM_034301597.1 mRNA upstream 17021 14016688 ~ 14046043 (-) True igf2bp3
XM_034301599.1 mRNA upstream 17021 14016688 ~ 14046042 (-) False igf2bp3
XM_034301600.1 mRNA upstream 17021 14016688 ~ 14046041 (-) False igf2bp3
XM_034301601.1 mRNA upstream 17021 14016688 ~ 14045017 (-) False igf2bp3
TU480965 other downstream 208041 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 208080 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 410976 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 576861 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 828481 13140694 ~ 13141115 (-) True G404999
XR_004577571.1 other upstream 81705 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 114952 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 543550 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 546439 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 967809 14967476 ~ 15013988 (-) True G405961

Expression Profile