Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008141 |
| length | 878 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 2 |
| gene id | XLOC_004262 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 36041617 ~ 36156971 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007015 | actin filament organization | biological_process |
| GO:0048870 | cell motility | biological_process |
| GO:0008064 | regulation of actin polymerization or depolymerization | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0031209 | SCAR complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0044877 | protein-containing complex binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040625-77 | Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex). |
| ensembl_id | ENSDART00000061520 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008124 | lncRNA | downstream | 301001 | 35725245 ~ 35741444 (-) | False | XLOC_004257 |
| TCONS_00008123 | lncRNA | downstream | 301001 | 35725245 ~ 35741444 (-) | True | XLOC_004257 |
| TCONS_00008837 | lncRNA | downstream | 301004 | 35664551 ~ 35741441 (-) | False | XLOC_004257 |
| TCONS_00008484 | lncRNA | downstream | 301005 | 35664551 ~ 35741440 (-) | False | XLOC_004257 |
| TCONS_00008839 | lncRNA | upstream | 195601 | 36242059 ~ 36246756 (-) | True | XLOC_004264 |
| TCONS_00008152 | lncRNA | upstream | 244350 | 36290808 ~ 36291682 (-) | True | XLOC_004266 |
| TCONS_00008841 | lncRNA | upstream | 437934 | 36484392 ~ 36687156 (-) | False | XLOC_004269 |
| TCONS_00008840 | lncRNA | upstream | 437934 | 36484392 ~ 36687156 (-) | False | XLOC_004269 |
| TCONS_00008161 | lncRNA | upstream | 437934 | 36484392 ~ 36687161 (-) | False | XLOC_004269 |
| TCONS_00008138 | mRNA | downstream | 1896 | 36037076 ~ 36040549 (-) | True | XLOC_004261 |
| TCONS_00008134 | mRNA | downstream | 32521 | 35779782 ~ 36009924 (-) | False | XLOC_004260 |
| TCONS_00008142 | mRNA | upstream | 2121 | 36048579 ~ 36051004 (-) | False | XLOC_004262 |
| TCONS_00008143 | mRNA | upstream | 2428 | 36048886 ~ 36156971 (-) | True | XLOC_004262 |
| TCONS_00008144 | mRNA | upstream | 169240 | 36215698 ~ 36230163 (-) | False | XLOC_004263 |
| TCONS_00008145 | mRNA | upstream | 169322 | 36215780 ~ 36230146 (-) | True | XLOC_004263 |
| TCONS_00008146 | mRNA | upstream | 207826 | 36254284 ~ 36279664 (-) | False | XLOC_004265 |
| TCONS_00008119 | other | downstream | 817306 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008105 | other | downstream | 1575932 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008102 | other | downstream | 1686783 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008088 | other | downstream | 2076173 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008078 | other | downstream | 2671078 | 33371251 ~ 33371367 (-) | True | XLOC_004227 |
| TCONS_00008174 | other | upstream | 1252913 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008194 | other | upstream | 2128613 | 38175071 ~ 38175150 (-) | True | XLOC_004294 |
| TCONS_00008207 | other | upstream | 2901529 | 38947987 ~ 38949751 (-) | True | XLOC_004305 |
| TCONS_00008210 | other | upstream | 3043417 | 39089875 ~ 39089991 (-) | True | XLOC_004308 |
| TCONS_00008222 | other | upstream | 4136223 | 40182681 ~ 40182796 (-) | True | XLOC_004319 |
